Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02462 ATGGCGAACTTCCGTCTCCACTGTCGGCTCTTTTCTCTTGCAGTTTTTCTTTTTCTCTTCTCATTTCCTCTCTCTTTCAGTCATTCGCAGTACGATGATGACGAATCCGATCAAAACTCTCCAATCTCTCGCTTTCAACACTACCTCAGAATCAAAACCGCTCATCCGGATCCGGATTACGCCTCCGCTGTCTCCTTTCTCGAATCTCAAGCACTGGAAATTGGTCTCCATACGAAGATTCTTGAGTTTGTTCCAGGTAAACCTCTTCTCCTCGTGACCTGGAATGGATTGAATCCTTCTTTGCCCTCGATTTTACTCAACTCTCACATGGACTCTGTCCCCGCTGAGCCCTCTAAATGGCTCTATCCGCCGTTCTCCGCCGTCCGGACCTCCGATGGCAAGATCTTCGCCCGTGGTTCTCAAGATGATAAATGTATAGCTATCCAGTATCTCGAAGCCATTCGGAGCCTCCGAAGTCGGAATTTCATCCCTGACCGTACGATTCACATCTCGTATGTGCCGGATGAGGAGATTGGGGGTTTTGATGGAGCTGCGAAGTTCGTCTTGTCGAAGGAGTTTAAGGAGTTGAATGTTGGATTCATGATGGACGAAGGACAGGCGTCGCCGGGAGATGAGTTTAGGGTTTTTTACGCCGATAGATCGCCGTGGGGGCTGAAAATTCGGGCTGAAGGAACCCCTGGACATGGTTCTAGAATGTACGATAACAGTGCTATGGAGAATTTGATGAAGAGCGTTGAGATTATCAGTAAGTTTAGAGAGAGCCAATTCGATATGGTGAAGGCCGGTGAAGCTGCTAATTCAGAAGTCATCTCTGTCAATCCTGTTTTCGTCAACGCCGGAATTCCCTCCCCCACTGGATTTGTGATGAACATGCAACCTTCGGAGGCGGAAGCCGGTTTCGATCTCAGAATACCGCCGACCGCCGACCCAGATGCCATTAGAAGAAGAATTAGGGAGGAATGGGCTCCAGCTCGACGGAACTTGACGTCTCAGATTATTGAGAAAGGACCCATAAGAGACTATTTGGGACGTCCATTATTGACGATGACTAACGATTCGAATCCGTGGTGGTCTGTTTTCAAGACAGCCATCTCAGACGCTGGAGGTAAGCTTTCTAGGCCCGAAATCTTGGCTTCGACGACTGATGCACGCTTCATGAGACAGTTAGGCATTCCTGTTCTTGGTTTCTCCCCAATGAGTAACACTCCTATCTTATTGCACGAACACAACGAGTTCTTGAAGGACACCGTCTTCTTAAGGGGCATAAAGATTTATGAGTCCATAATCAGTGCCTTGAGTTCCTTTGTAGCGGATGCATCCCAGTAA 1347 48.18 MANFRLHCRLFSLAVFLFLFSFPLSFSHSQYDDDESDQNSPISRFQHYLRIKTAHPDPDYASAVSFLESQALEIGLHTKILEFVPGKPLLLVTWNGLNPSLPSILLNSHMDSVPAEPSKWLYPPFSAVRTSDGKIFARGSQDDKCIAIQYLEAIRSLRSRNFIPDRTIHISYVPDEEIGGFDGAAKFVLSKEFKELNVGFMMDEGQASPGDEFRVFYADRSPWGLKIRAEGTPGHGSRMYDNSAMENLMKSVEIISKFRESQFDMVKAGEAANSEVISVNPVFVNAGIPSPTGFVMNMQPSEAEAGFDLRIPPTADPDAIRRRIREEWAPARRNLTSQIIEKGPIRDYLGRPLLTMTNDSNPWWSVFKTAISDAGGKLSRPEILASTTDARFMRQLGIPVLGFSPMSNTPILLHEHNEFLKDTVFLRGIKIYESIISALSSFVADASQ 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18205007 18208061 - CmoCh04G024620.1 Cmo04g02462 381437

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02462 448 TIGRFAM Ac-peptdase-euk: N-acyl-L-amino-acid amidohydrolase 36 442 IPR010159 GO:0004046|GO:0005737|GO:0006520
Cmo04g02462 448 Gene3D - 361 442 - -
Cmo04g02462 448 PANTHER AMINOACYLASE-1 29 445 - -
Cmo04g02462 448 PIRSF ACY-1 31 444 - -
Cmo04g02462 448 SUPERFAMILY Zn-dependent exopeptidases 37 440 - -
Cmo04g02462 448 Gene3D - 225 333 - -
Cmo04g02462 448 Pfam Peptidase dimerisation domain 220 326 IPR011650 -
Cmo04g02462 448 Pfam Peptidase family M20/M25/M40 105 437 IPR002933 GO:0016787
Cmo04g02462 448 PANTHER PUTATIVE-RELATED 29 445 - -
Cmo04g02462 448 CDD M20_AcylaseI_like 39 440 - -
Cmo04g02462 448 Gene3D Zn peptidases 32 224 - -
Cmo04g02462 448 SUPERFAMILY Bacterial exopeptidase dimerisation domain 224 330 IPR036264 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02462 K14677 ACY1; aminoacylase [EC:3.5.1.14] - vvi:100257526 687.182
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00300 Cmo-Chr2:1495844 Cmo04g02462 Cmo-Chr4:18205007 5.54E-173 dispersed
Cmo04g02462 Cmo-Chr4:18205007 Cmo02g01649 Cmo-Chr2:9510395 1.69E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g289 . . . . . . . . Cmo04g02462 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo18g00187 . Bda01g01422 Bpe02g01636 . Bma01g00825 . . . . . . Car04g02280 . Cpe01g02042 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010544 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 3 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g02462 Cmo_Chr04 FPKM 0.639443 0.533442 11.068273 10.995046 69.856903 74.329773 72.17189 11.561785 10.307039 10.584124