Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02465 ATGGTGATGTGGGTATTCGGGTACGGGTCTCTCATTTGGAAAACTGGCTTCCCCTACGACGAAAAGTTACCCGGCTGTATCAAAGGCTACCGCCGTGTCTTCTATCAAGGTCCCCATTCGACCGATTTCTCTCTGTTTTTTGGATTTCTTCTATATATATCTTTCTGTTTGATTTGTGCGTGTTTTTTGTTACTAGGGAGTACTGATCATAGAGGCACGCCTGAATATCCTGGAAGAACTGTGACATTGGAGCCTGCAGAAGGGGAATGGGGCGTTGCATACAAGATCACCAGAAAAGAGGATAAAGAGACTGCACTAAATCATTTAGAAGTGAGAGAGAAACAATATGACAAAAAAGAATATGTGGACTTTTTCAATGACCCCATGGCTATCACCCCTGTTGTTTCTGGAGTAATGGTATATATTGCATCTCCAGACAAGAAGCTAAACAAGAATTACCTTGGCCCTGCCTCGCTCGAGGAGATTGCTAAGCAGATAGTTGATGCGCAAGGGCCCTCAGGACCCAACAAGGACTACCTTTTTCAACTTGAAAAGGCTCTTCTCGAGTTTGGATGGGAAGATAAACATGTCATGGATCTTGCAAATGAAGTCAGAACCCTTCTTTCTGACGGGGAGCACACTGATACTTAG 651 44.09 MVMWVFGYGSLIWKTGFPYDEKLPGCIKGYRRVFYQGPHSTDFSLFFGFLLYISFCLICACFLLLGSTDHRGTPEYPGRTVTLEPAEGEWGVAYKITRKEDKETALNHLEVREKQYDKKEYVDFFNDPMAITPVVSGVMVYIASPDKKLNKNYLGPASLEEIAKQIVDAQGPSGPNKDYLFQLEKALLEFGWEDKHVMDLANEVRTLLSDGEHTDT 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18221001 18224626 + CmoCh04G024650.1 Cmo04g02465 381440

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02465 216 PANTHER CATION TRANSPORT PROTEIN CHAC-RELATED 2 212 IPR006840 GO:0003839|GO:0006751
Cmo04g02465 216 Pfam ChaC-like protein 64 206 IPR006840 GO:0003839|GO:0006751
Cmo04g02465 216 Pfam ChaC-like protein 3 37 IPR006840 GO:0003839|GO:0006751
Cmo04g02465 216 PANTHER GLUTATHIONE-SPECIFIC GAMMA-GLUTAMYLCYCLOTRANSFERASE 1 2 212 - -
Cmo04g02465 216 Gene3D - 2 212 - -
Cmo04g02465 216 CDD GGCT_like 5 143 IPR013024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02465 K22596 GGCT; gamma-glutamylcyclotransferase, plant [EC:4.3.2.9] - csv:101217290 329.331
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01635 Cmo-Chr1:12408928 Cmo04g02465 Cmo-Chr4:18221001 2.07E-54 dispersed
Cmo04g02465 Cmo-Chr4:18221001 Cmo05g00642 Cmo-Chr5:3239680 1.48E-59 dispersed
Cmo04g02465 Cmo-Chr4:18221001 Cmo12g00227 Cmo-Chr12:1499070 1.66E-57 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g283 . . . . . . . . Cmo04g02465 . . . . . . . . Bhi04g01928 Tan11g1292 . . Hepe02g2283 . . Cla08g00579 Cam08g0994 Cec08g0583 Cco08g0693 Clacu08g0703 . Cre08g0514 Cone4ag1396 Cone7ag1541 . . . . . Cme03g00573 . . . Bda13g01484 . Bpe14g00379 . Bma02g00221 . . . . . Car04g02282 . Cpe01g02044 . . . . . . . . . . . . . . . Lsi08g00423 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008545 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g02465 Cmo_Chr04 FPKM 3.057198 2.99436 2.891395 2.59629 7.029787 5.188387 7.348781 2.636684 1.898878 2.288118