Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02466 ATGATTTGTCGAGGCTTTCTAAAAGATTTGTTTTACAATAATTATCCTTCGAAGTTCCGTAGAAGAAAAGCTCTTCGAAGTTCATTTGATTGCAACCGAAGGTTTCTCCAGATGAAGGGCGGCCATGGCGCTCTGGAGGTGGCCAAGACGGTCATGGAGGTCGCAGACGTGGCCTGGACTGCGATTGAGTGTTGTCATCACCATAAACCTAGCAACGATGCCGCCGAGCCCAATCTTACAGAGGAAGAACAGCTTGAGGCTCTGCGATCGGAGAATCGGAGATTGAGGAATTTGCTTGAGCAAAATCTCGACCTCCTTCAGCAGCTATCTGAATCGCACTGCTTGTTGAAGGATTGTCCCCCTGATTTGTACGCTCGTCTCGTTGCGACGGTGGATTCTGAAAAGTTCTTGAATGAAATTAAATCCCTCAACGAAGCATCAAAAGATGGAATTACCTATGAGTTTCCTTTCAGGGAAGCTACAGGAGCTGATTCGCACACAGCTGAGATTCTTGTGAATGTTAGCCGTGATGCGCCCAGTTGGTGGATATGGGTTACTGAAGATATGGTTCCGAGCAAAGTTGAAGAATGGAGTGGGATTGATGATGAAAGCTATGTGATTGTATCTGAAGAACATGTGGTGGATGCAGTTGCCCACTTCATGGCTAGATGTATTATGTCCAACCCGAATACCCGGAATGTATCACCTGAAGAGCTGCAGAAAACAATAGCAAAAGCGCTGAAGGGTATGGGCAGCAAAATGGAGAAGATGTTTGAAATTTGGCATGCTGGGCTGCTGTTTTATTCCTTGGCCACTTGGGGACTTGCATTGGCGGGCTTGTACCAGGGTCGTGCTATATTGAAACTGGCCGCCACTGGTGTTCACCATACAAGCAAAGCAGTGATGAAGGTGCTCTGA 918 46.95 MICRGFLKDLFYNNYPSKFRRRKALRSSFDCNRRFLQMKGGHGALEVAKTVMEVADVAWTAIECCHHHKPSNDAAEPNLTEEEQLEALRSENRRLRNLLEQNLDLLQQLSESHCLLKDCPPDLYARLVATVDSEKFLNEIKSLNEASKDGITYEFPFREATGADSHTAEILVNVSRDAPSWWIWVTEDMVPSKVEEWSGIDDESYVIVSEEHVVDAVAHFMARCIMSNPNTRNVSPEELQKTIAKALKGMGSKMEKMFEIWHAGLLFYSLATWGLALAGLYQGRAILKLAATGVHHTSKAVMKVL 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18224660 18229086 + CmoCh04G024660.1 Cmo04g02466 381441

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02466 305 PANTHER RING FINGER PROTEIN 41 305 - -
Cmo04g02466 305 Coils Coil 78 112 - -
Cmo04g02466 305 PANTHER EXPRESSED PROTEIN 41 305 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02466 - - - cmos:111459551 586.645
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g02466 Cmo15g00701 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02466 Cmo-Chr4:18224660 Cmo05g00583 Cmo-Chr5:2885489 3.55E-15 dispersed
Cmo15g00701 Cmo-Chr15:3413919 Cmo04g02466 Cmo-Chr4:18224660 1.34E-180 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g281 . . . . . . . . Cmo04g02466 Cmo15g00701 . . . . Sed03g0792 . . Bhi04g01924 Tan11g1288 Cmetu03g2241 . Hepe02g2281 . Lcy10g1219 Cla08g00581 Cam08g0996 Cec08g0585 Cco08g0695 Clacu08g0705 . Cre08g0516 Cone4ag1397 . Cone17ag1277 Cone20ag0449 . . . . Blo17g00179 . . Bda13g01483 . Bpe14g00381 . Bma02g00219 . . . . . Car04g02283 Car15g00632 Cpe01g02045 . . . . . . . . . . . . . . . Lsi08g00427 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005536 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 2 2 1 1 1 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g02466 Cmo_Chr04 FPKM 3.242929 4.003827 0.0 0.0 0.0 0.101037 0.07763 0.042518 0.0 0.075926