Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02470 ATGGCGGCTCAAACCATGGTTCTTTCCTCCGGTGTGTGCGCCAGCCATGGCGTAGCGTTGAAGAGAGAAATCGCTTCGTTGACGCAGAGGCTTAGACCTAACGCCCAATTTAGTCGCTTGTTTTTCAATCCTCTGCCTTCGAGTTCCGTTTCTTTACCTGCGCGTGGATTTAGGACTCTTGCGATCTTTAAATCGAAGGCGAAAGTGCCGGCGAAGAAGGTAATTGTTGTGAAGCCGAAGGAGAAGGTTGAAGACGGCATTTTCGGGACGTCTGGTGGCATTGGTTTCACTAAGCAGAATGAACTGTTCGTCGGCCGTGTCGCCATGATCGGCTTTGCTGCGTCGTTGCTGGGAGAGGGAATCACCGGAAAGGGAATTCTGGCTCAACTGAATTTAGAAACTGGAGTTCCGATTTACGAAGCGGAGCCTCTTCTTCTGTTCTTCATCTTATTCACTCTTCTCGGAGCCATTGGAGCGCTAGGAGACCGTGGAAAATTCATCGACGATCCAGAACCAGCCACCGGACTGGAACGCGCCGTTATCCCTCCCGGCAAGGGCCTCAGATCGGCGCTAGGTCTCAAAGAAGGAGGTCCGTTGTTCGGATTCACGAAGGCAAATGAGCTGTTCGTCGGAAGATTGGCGCAGCTAGGGTTTGCGTTCTCGCTGATCGGAGAAATTATTACAGGTAAGGGAGCGTTGGCGCAGTTGAACATTGAGACGGGAGTGCCGATCAATGAAATTGAGCCGCTGGTTTTGTTGAACGTTCTGTTTTTCTTCATTGCTGCTGTGAATCCTGGAACTGGTAAATTCGTCACTGACGAGGAAGAGGATTAA 834 50.84 MAAQTMVLSSGVCASHGVALKREIASLTQRLRPNAQFSRLFFNPLPSSSVSLPARGFRTLAIFKSKAKVPAKKVIVVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKGLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18247639 18249613 - CmoCh04G024700.1 Cmo04g02470 381445

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02470 277 Coils Coil 271 277 - -
Cmo04g02470 277 Pfam Chlorophyll A-B binding protein 92 222 IPR022796 -
Cmo04g02470 277 Gene3D Chlorophyll a/b binding protein domain 56 138 - -
Cmo04g02470 277 PANTHER PHOTOSYSTEM II 22 KDA PROTEIN, CHLOROPLASTIC 3 190 - -
Cmo04g02470 277 PANTHER UPF0041 BRAIN PROTEIN 44-RELATED 3 190 - -
Cmo04g02470 277 PANTHER PHOTOSYSTEM II 22 KDA PROTEIN, CHLOROPLASTIC 200 263 - -
Cmo04g02470 277 Gene3D Chlorophyll a/b binding protein domain 139 248 - -
Cmo04g02470 277 PANTHER UPF0041 BRAIN PROTEIN 44-RELATED 200 263 - -
Cmo04g02470 277 SUPERFAMILY Chlorophyll a-b binding protein 81 255 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02470 K03542 psbS; photosystem II 22kDa protein - csv:101206477 440.269
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g02470 Cmo15g00693 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g00693 Cmo-Chr15:3384093 Cmo04g02470 Cmo-Chr4:18247639 3.90E-150 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g264 Blo01g01295 . . . Bpe02g00643 . . Bma01g02070 Cmo04g02470 Cmo15g00693 . . . . Sed01g3127 . . Bhi04g01917 Tan11g1281 Cmetu03g0812 . Hepe02g2274 . Lcy10g1223 Cla08g00587 Cam08g1002 Cec08g0591 Cco08g0701 Clacu08g0711 . Cre08g0522 Cone4ag1409 Cone7ag1531 . . . . . Cme03g00563 . . . . . . . . . . . . . Car04g02287 Car15g00626 Cpe01g02049 . . . . . . . . . . . . . . . Lsi08g00433 . Chy03g00803 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009327 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g02470 Cmo_Chr04 FPKM 31.097618 26.168266 0.034814 0.0 0.0 0.0 0.0 0.017429 0.0 0.0