Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02472 ATGACCGTCGTAGCAACGGCTGCAGCTCTCTCGTTGCCGATCTCATTTTCTAAATCTCCGAAGTTCAATTTCAAGAAGGTGCGTGTTTCTTTTTCCTTCCCTGATTTGGTCGTTTGTATCTTGGTATCGATTTCTGTTCGTGGAAAAGAAGATCGAGAGTTCATTTTGGTCGTTTCAATGTACATTTTGCTGAGTGTGAAAGTTGGATTTAGAGTGTTTGCTGTGTTTGGAGAGGAGGGGGCTATAGAGAGGAAGAGTGGTTGGCAGACGCTCTTTGACGTAGAAGATCCAAGGACAAAAGTTCCTCAATCTAAAGGGAAATTCTTAGATGCTAACCAAGCTCTGGAAGTGGCCAGAAATGATATTCAATACTGTGATTGGCGAGCTCGGCAAGATGTTCTTACAATCATGCACCTCCATGAGAAGGTTGTGGAAGTCCTAAATCCTCTAGCCCGGAACTACAAGTCTATTGGAACAATGAAAAAGGAGCTTGCTGAATTACAGGGGGAATTGGCAGAAGCTCACAAACAGGTTCATAAATCTGAAGCACGGGTTAGCACTGCCTTAGATAAACTAGCTTATATGGAAGAATTGGTGCATGATAGGCTGTTACAAGACAGAAACGCAGCGGAATTGGATAGCCCATCTACCTCGCCCGGTACCTCAACACAATCTCATGATTCCATAACTAGAAGATCGCCAAAGAAAAGCTTAAATGTATCAGGACCTGTCGAACCGTATCATCCTCGATTGAAGAACTTCTGGTATCCTGTTGCTTTCTCCAGTGATCTGAGAGATGACACAATGATCCCATTTGATTGTTTTGAAGAACCATGGGTTCTTTTCCGTGGAAAGGATGGCAATCCTGGATGCATACGAAACACATGTGCCCATAGGGCATGCCCTCTTCACCTCGGTTCTGTCAACGATGGTCGAGTCCAGTGTCCTTACCATGGTTGGGAATACTCAACGGATGGCAAATGTGAGAAAATGCCATCGACGCGACTACTAAATGTGAAAATAAAATCATTGCCATGCTTCGAGAAAGAAGGAATGATCTGGGTTTGGCCAGGTAATGATCCTCCAGCAGCTAATCTTCCTTCACTCCAACCTCCTCCTGGTTTTCAAATCCATGCTGAGCTTGTCATTGAAATTCCGGTGGAGCATGGATTACTTCTAGATAACCTCCTGGATCTTGCTCATGCACCTTTCACTCATACTTCCACTTTTGCAAAAGGATGGAGCGTACCCAGCTTGGTGAAATTTTTGACCCCTGCATCTGGCCTGCAAGGATACTGGGACCCATATCCAATCGACATGGAGTTTCGACCACCTTGTATGGTACTATCAACCATAGGGATTTCCAAGCCAGGAAAACTAGAAGGCCAAACTACAAGGGAATGCTCAACACATCTTCATCAACTTCATGTGTGCTTACCTTCAACAAGACAGAAGACAAGACTACTCTATAGGATGTCACTGGATTTCGCTCCCATATTGAAGCATATTCCTTTCATGCACTATCTCTGGAGACATTTCGCAGAACAGGTATTGAATGAGGACTTGAGGCTTGTCATTGGACAGCAAGAAAGAATGCTCAACGGAGAAAACATCTGGAACATGCCAGTTTCTTATGATAAGCTAGGTGTAAGATATAGGCTATGGAGAAATGCAGTAGAGGAAGGAGCAAAACAACTACCCTTCAGCAAATCAAATTGA 1719 43.98 MTVVATAAALSLPISFSKSPKFNFKKVRVSFSFPDLVVCILVSISVRGKEDREFILVVSMYILLSVKVGFRVFAVFGEEGAIERKSGWQTLFDVEDPRTKVPQSKGKFLDANQALEVARNDIQYCDWRARQDVLTIMHLHEKVVEVLNPLARNYKSIGTMKKELAELQGELAEAHKQVHKSEARVSTALDKLAYMEELVHDRLLQDRNAAELDSPSTSPGTSTQSHDSITRRSPKKSLNVSGPVEPYHPRLKNFWYPVAFSSDLRDDTMIPFDCFEEPWVLFRGKDGNPGCIRNTCAHRACPLHLGSVNDGRVQCPYHGWEYSTDGKCEKMPSTRLLNVKIKSLPCFEKEGMIWVWPGNDPPAANLPSLQPPPGFQIHAELVIEIPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGKLEGQTTRECSTHLHQLHVCLPSTRQKTRLLYRMSLDFAPILKHIPFMHYLWRHFAEQVLNEDLRLVIGQQERMLNGENIWNMPVSYDKLGVRYRLWRNAVEEGAKQLPFSKSN 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18260815 18264056 + CmoCh04G024720.1 Cmo04g02472 381447

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02472 572 MobiDBLite consensus disorder prediction 210 244 - -
Cmo04g02472 572 Gene3D - 249 371 IPR036922 GO:0051537
Cmo04g02472 572 Coils Coil 157 184 - -
Cmo04g02472 572 PANTHER CHLOROPHYLLIDE A OXYGENASE, CHLOROPLASTIC-LIKE 109 570 - -
Cmo04g02472 572 SUPERFAMILY ISP domain 251 360 IPR036922 GO:0051537
Cmo04g02472 572 ProSitePatterns Bacterial ring hydroxylating dioxygenases alpha-subunit signature. 296 318 IPR015881 GO:0005506|GO:0051537
Cmo04g02472 572 Pfam Rieske [2Fe-2S] domain 255 336 IPR017941 GO:0051537
Cmo04g02472 572 Pfam Vanillate O-demethylase oxygenase C-terminal domain 388 412 IPR044043 GO:0016491
Cmo04g02472 572 CDD Rieske_RO_Alpha_Cao 238 366 - -
Cmo04g02472 572 MobiDBLite consensus disorder prediction 210 228 - -
Cmo04g02472 572 Gene3D - 373 566 - -
Cmo04g02472 572 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 255 355 IPR017941 GO:0051537
Cmo04g02472 572 SUPERFAMILY Bet v1-like 351 559 - -
Cmo04g02472 572 PANTHER IRON-SULFUR DOMAIN CONTAINING PROTEIN 109 570 - -
Cmo04g02472 572 Pfam Pheophorbide a oxygenase 442 536 IPR013626 GO:0010277
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02472 K13600 CAO; chlorophyllide a oxygenase [EC:1.14.13.122] - csv:101205768 991.875
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g02472 Cmo15g00690 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02472 Cmo-Chr4:18260815 Cmo10g01057 Cmo-Chr10:5613309 4.91E-16 dispersed
Cmo15g00690 Cmo-Chr15:3366944 Cmo04g02472 Cmo-Chr4:18260815 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g260 Blo01g01296 Blo12g01127 Bda01g00654 Bda03g00012 Bpe02g00642 Bpe04g00006 Bma04g00011 Bma01g02071 Cmo04g02472 Cmo15g00690 . . . . . . . Bhi04g01914 . . . Hepe02g2268 . . Cla08g00590 Cam08g1005 Cec08g0595 Cco08g0704 Clacu08g0714 . Cre08g0525 Cone4ag1410 Cone7ag1528 . . . . . Cme03g00556 . . . . . . . . . . . . . Car04g02290 Car15g00623 Cpe01g02051 . . . . . . . . . . . . . . . Lsi08g00436 . Chy03g00799 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005024 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g02472 Cmo_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.199199 0.213598