Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02477 ATGGATTCCTCGCTAAACTTTTGCATAATTTTTACTATCGTGATTCAATGCTTCTCAATCTCCTTCATCGACGCCATATCCTCTCCGGTCGGCGGTGATCATGACGGTTCTGCTCTAATAGGCGCAGGCAGCGGCATCAATTCTGTGCCGGAGTCTAATTCTCTCAAGAATCAGAGTGTTAGAACGTTGATGGCTCGATCAGACTCTCAGAGCTGCGAGGTGTGGACGGAGGCATGCTCTGAGGCGATTCTCAGTTTGGCGAAGCGGCCGGATGTTGTTGATTGGTTGAAGAAGGTGAGGAGGAGAATCCATGAGAATCCGGAGCTTGCGTTTGAGGAATTTGAGACGAGTCAATTGGTACGCGATGAGTTGGACCGGATGGATGCTAGTTACGAGCATCCGTTTGCTAAGACTGGCGTTCGTGCTTGGATCGGGACTGGCGGACCGCCTTTTGTTGCTCTTAGGGCAGATATGGACGCTCTTCCAATCCAGGAAGCCGTGGAATGGGAGCACAAAAGCAGAGTACCAGGCAAGATGCATGCTTGTGGGCACGATGCTCACGTTACAATGCTTCTTGGTGCTGCCAAGATCTTGAAGGATCGTGAACATCTCTTGAAGGGAACAGTGGTTTTGCTGTTTCAGCCAGCTGAAGAAGCTGGCAATGGCGCAAAGCGAATGATTGGCGATGGAGCTTTAAGAAACGTTCAAGCCATTTTTGCTGTTCATGTTTCTCATGAACTTCCCACCGCCATTATTGGGTCCCGGCCTGGTCCTCTGCTAGCTGGCTGTGGCTTCTTTAGGGCGGTGATTACCGGCAAAAAGGGCCAGGCTGGGTCGCCTCACCGGTCCGTCGACCCGGTTCTGGCTGCCTCAGCCGCTGTTATCAGTCTGCAGGGGATTGTGTCTCGTGAAGCAAATCCTTTAGATTCGCAGGTTGTGTCAGTGACTTGGTTCAATGGAGGGAGTAATCTGGATGTGATACCAGACACTGTCGTCATTGGCGGTACTTTCAGGGCTTTCTCCAACTCTAGCTTCTACCAACTTCTTCAAAGAATAGAGGAGGTTATTGTGGAGCAGGCCAGAGTTTATAGATGCTCGACAACGGTGGACTTCTTTGAAAAAGAATACACCATATACCCTCCAACCGTGAACGACGAAAAGATGTATGAGCATGTGAAGAAAGTGGCCACCGATCTACATGGCTCACACAATTACAGGGTGGTCCCACCAATGATGGGGGCCGAAGATTTTTCCTTTTACTCGGAGTTTGTTCCTACAGCATACTATTACATAGGAGTCAGGAACGAGACCTTAGGCTCCATCCACACAGGCCACTCTCCCTATTTCATGATCGACGAAGACATGCTACCCATTGGCGCTGCCACTCATGCAACCATCGCCGAGAGGTATCTGTACGAGCATGGAGAATGA 1431 50.17 MDSSLNFCIIFTIVIQCFSISFIDAISSPVGGDHDGSALIGAGSGINSVPESNSLKNQSVRTLMARSDSQSCEVWTEACSEAILSLAKRPDVVDWLKKVRRRIHENPELAFEEFETSQLVRDELDRMDASYEHPFAKTGVRAWIGTGGPPFVALRADMDALPIQEAVEWEHKSRVPGKMHACGHDAHVTMLLGAAKILKDREHLLKGTVVLLFQPAEEAGNGAKRMIGDGALRNVQAIFAVHVSHELPTAIIGSRPGPLLAGCGFFRAVITGKKGQAGSPHRSVDPVLAASAAVISLQGIVSREANPLDSQVVSVTWFNGGSNLDVIPDTVVIGGTFRAFSNSSFYQLLQRIEEVIVEQARVYRCSTTVDFFEKEYTIYPPTVNDEKMYEHVKKVATDLHGSHNYRVVPPMMGAEDFSFYSEFVPTAYYYIGVRNETLGSIHTGHSPYFMIDEDMLPIGAATHATIAERYLYEHGE 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18279987 18285521 + CmoCh04G024770.1 Cmo04g02477 381452

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02477 476 Gene3D - 261 379 - -
Cmo04g02477 476 PANTHER IAA-AMINO ACID HYDROLASE ILR1-LIKE 6 52 474 - -
Cmo04g02477 476 Pfam Peptidase family M20/M25/M40 153 468 IPR002933 GO:0016787
Cmo04g02477 476 SUPERFAMILY Zn-dependent exopeptidases 91 473 - -
Cmo04g02477 476 TIGRFAM amidohydrolases: amidohydrolase 98 459 IPR017439 GO:0016787
Cmo04g02477 476 PANTHER PEPTIDASE M20 FAMILY MEMBER 52 474 IPR017439 GO:0016787
Cmo04g02477 476 CDD M20_IAA_Hyd 96 471 IPR044757 GO:0009850|GO:0016787
Cmo04g02477 476 SUPERFAMILY Bacterial exopeptidase dimerisation domain 262 371 IPR036264 -
Cmo04g02477 476 Pfam Peptidase dimerisation domain 266 361 IPR011650 -
Cmo04g02477 476 Gene3D Zn peptidases 98 456 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02477 K21604 IAR3, ILL6; jasmonoyl-L-amino acid hydrolase [EC:3.5.1.127] K14664 csv:101215789 814.298
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g02477 Cmo15g00685 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02477 Cmo-Chr4:18279987 Cmo14g01311 Cmo-Chr14:10967137 1.22E-177 dispersed
Cmo15g00685 Cmo-Chr15:3349906 Cmo04g02477 Cmo-Chr4:18279987 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g253 . . . . . . . . Cmo04g02477 Cmo15g00685 . . . . Sed01g3120 . . Bhi04g01905 Tan11g1268 Cmetu03g0844 . Hepe02g2259 . Lcy10g1230 Cla08g00599 Cam08g1012 Cec08g0603 Cco08g0713 Clacu08g0724 . Cre08g0533 . . . Cone20ag0442 . . . Cme03g00543 Blo17g00176 . . Bda13g01480 . Bpe14g00384 . Bma02g00217 . . . . . Car04g02294 Car15g00620 Cpe01g02055 . . . . . . . . . . . . . . . Lsi08g00440 . Chy03g00792 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008544 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g02477 Cmo_Chr04 FPKM 18.225269 18.640732 26.513912 28.936096 40.020336 38.371616 38.682331 40.069134 39.076176 39.661613