Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02481 ATGGAGTTGAAAGCAGCAGATGTAGCGGAAGTTCAACAAATACAGCAACATTTCCATGTGTTGGCTGTCGATGATAGCCTTATAGACAGAAAACTTTTGGAAAAGCTCCTAAGAATTTCTTCATGCGAAGTGACCTGCGTGGAGTCTGGAGACAAAGCTCTTAGATACCTGGGTCTGCTTGATGACCTTGACAAATTTTCTTCCTCTGCTGCTTCATTTTCTTCCCCACAACTCTCCCACCAACAGGAAGTCAAAGTCAACTTAATCATGACAGACTACTGTATGCCTGGGATGACTGGTTATGATCTACTCAAACGACTCAAGGGATCTTCTTGGAAAGATATTCCTGTTGTTGTCATGTCATCGGAGAATGAACCTTCAAGAATCCACATGTGCTTGGAAGAAGGAGCAGAGGAATTCCTTTTGAAGCCTCTTCAACTATCAGACGTGAAGAAGCTCGAGCCTCACCTTCAGAGGTCCCTCAGCCGTTCATCTACTGAAATAAAGGAAGAAGAAACCGTCGAAATCGGAATCACTAATTCCGACGCCATTGACGACGAAAACAGCACGAAAGAAGAAAATAACAAAAACGACAATAACAATACCTTCAGCAAGAGAAAAGCCGCGAATCCAGAGCCATCTGAAAGACGACCAAAACTGAAAGAACTGCAAGCTGCAGTATAA 684 43.27 MELKAADVAEVQQIQQHFHVLAVDDSLIDRKLLEKLLRISSCEVTCVESGDKALRYLGLLDDLDKFSSSAASFSSPQLSHQQEVKVNLIMTDYCMPGMTGYDLLKRLKGSSWKDIPVVVMSSENEPSRIHMCLEEGAEEFLLKPLQLSDVKKLEPHLQRSLSRSSTEIKEEETVEIGITNSDAIDDENSTKEENNKNDNNNTFSKRKAANPEPSERRPKLKELQAAV 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18300167 18302632 + CmoCh04G024810.1 Cmo04g02481 381456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02481 227 SUPERFAMILY CheY-like 18 152 IPR011006 -
Cmo04g02481 227 MobiDBLite consensus disorder prediction 155 227 - -
Cmo04g02481 227 Pfam Response regulator receiver domain 20 151 IPR001789 GO:0000160
Cmo04g02481 227 MobiDBLite consensus disorder prediction 209 227 - -
Cmo04g02481 227 CDD REC_typeA_ARR 20 153 - -
Cmo04g02481 227 MobiDBLite consensus disorder prediction 155 176 - -
Cmo04g02481 227 MobiDBLite consensus disorder prediction 185 200 - -
Cmo04g02481 227 Gene3D - 19 220 - -
Cmo04g02481 227 PANTHER TWO-COMPONENT RESPONSE REGULATOR ORR4 10 224 - -
Cmo04g02481 227 Coils Coil 220 227 - -
Cmo04g02481 227 SMART REC_2 18 154 IPR001789 GO:0000160
Cmo04g02481 227 ProSiteProfiles Response regulatory domain profile. 19 158 IPR001789 GO:0000160
Cmo04g02481 227 PANTHER TWO-COMPONENT RESPONSE REGULATOR 10 224 IPR045279 GO:0009736
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g02481 Cmo15g00681 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02481 Cmo-Chr4:18300167 Cmo14g00521 Cmo-Chr14:2633524 7.00E-58 dispersed
Cmo15g00682 Cmo-Chr15:3337861 Cmo04g02481 Cmo-Chr4:18300167 1.99E-20 transposed
Cmo15g00681 Cmo-Chr15:3335966 Cmo04g02481 Cmo-Chr4:18300167 1.37E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9712 PF00072 Response_reg 7.60E-18 CL0304 Cmo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02481 K14492 - csv:101216267 283.493