Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02485 ATGGCAAGAACACCAACTCTAATTTTGTTTCTTTTACCTCTTTTGGCAACCTTTTCTGTCTGCTTCTCCGCCAACATTTTTTCTTTGCGCAAGAAAAATTCTGATCGCCTCCTCTCCTCGGCTGTGTTTCCTCTCAAAGGAAATGTTTATCCGCTCGGTTACTACTCTGTGTCTATTAACATTGGCAAAGGAGATGAGGCTTTTGAATTTGATATCGATTCTGGCAGTGACCTCACTTGGGTCCAATGTGATGCCCCCTGTACAGGTTGCACAAAGCCTCGTGGACAGTTATATAAACCTGACAACAATGCGTTGACTTGTTTTGAACCATTGTGTGCATCGCTCCACCTGACTGCTGATCAACAATGTGAGTCCGCAGATGAACAGTGCCAGTATGAAATTGAGTATGCTGACCATGGATCCTCGTTGGGCGTATGTGGATATGATCATAAATATTCTGTTCCAAACCCACCTCCTCCTACAGCTGGAGTTCTTGGCCTTGGCAATGGTGAAGTTAGCATTATCTCACAACTAAGCAACATGGGCATAATGCGAAACGTTGTAGGCCACTGTCTAAGTGAGCAAGGTGGATTTCTATTTTTTGGTGATGAACTCATACCTTCTTCTGGAGTAGCGTGGACAAGTATGTCTTCTGAATCCATAGGAAATCACTACTCTTCCGGACCTGCAGAAGTCTATTTTGGTGGAAAGGCTGCTGGTATCAAAGGTCTTACATTAGTTTTTGACAGTGGGAGCTCTTACACTTACTTCACCTCTCAAGTTTACGATTCCGTTCTTGCTCTGGTGAGAGATGATTTGAAAGGAAAACCTCTGGAAGATGCACCAGAGGATAAATCTCTTCCGATATGCTGGAGAGGCCCACAACCTTTCAAGTCGTTGCGTGATGTAAAGAACTACTTCAGGCCCTTGGCGTTGCACTTTACAAAAACTAAGAATGCTCAAATTCAATTGCCTCCAGAATCTTATCTAATCGTAACTAAATATGGGAATGTTTGCTTTGGGATTCTGAATGGCACTGAAGTTGGACTTGGGGATCTCAACATTATTGGTGGTAAAATGCTTCTGAGTTTTGGTCATGATAGAAAAAGCACTTTCTCATGCCAACAGCACTCTCATACCTTAGTTGCCTTAATTGTTACATTGGCTGACTTCGTTTCTCATTCAGACGTCTCTCTGCAAGATAAAATGGTGATCTATGACAACGAGCGGCGTAAGATCGGATGGTTTTCGACCAGTTGCAACAAATTTCAAAAGGAAGGCCAAAGTTTTTGTGAACCAGAAGGTCCGCTTAGTATCCTATCAGAGATGTAA 1332 42.87 MARTPTLILFLLPLLATFSVCFSANIFSLRKKNSDRLLSSAVFPLKGNVYPLGYYSVSINIGKGDEAFEFDIDSGSDLTWVQCDAPCTGCTKPRGQLYKPDNNALTCFEPLCASLHLTADQQCESADEQCQYEIEYADHGSSLGVCGYDHKYSVPNPPPPTAGVLGLGNGEVSIISQLSNMGIMRNVVGHCLSEQGGFLFFGDELIPSSGVAWTSMSSESIGNHYSSGPAEVYFGGKAAGIKGLTLVFDSGSSYTYFTSQVYDSVLALVRDDLKGKPLEDAPEDKSLPICWRGPQPFKSLRDVKNYFRPLALHFTKTKNAQIQLPPESYLIVTKYGNVCFGILNGTEVGLGDLNIIGGKMLLSFGHDRKSTFSCQQHSHTLVALIVTLADFVSHSDVSLQDKMVIYDNERRKIGWFSTSCNKFQKEGQSFCEPEGPLSILSEM 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18319504 18324001 + CmoCh04G024850.1 Cmo04g02485 381460

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02485 443 PANTHER ASPARTYL PROTEASES 388 423 IPR001461 GO:0004190|GO:0006508
Cmo04g02485 443 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 70 81 IPR001969 GO:0004190|GO:0006508
Cmo04g02485 443 Gene3D Acid Proteases 30 148 IPR021109 -
Cmo04g02485 443 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 388 423 - -
Cmo04g02485 443 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 146 360 - -
Cmo04g02485 443 Gene3D Acid Proteases 206 426 IPR021109 -
Cmo04g02485 443 Pfam Xylanase inhibitor N-terminal 55 149 IPR032861 -
Cmo04g02485 443 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 8 145 - -
Cmo04g02485 443 Pfam Xylanase inhibitor C-terminal 246 361 IPR032799 -
Cmo04g02485 443 Gene3D Acid Proteases 149 203 IPR021109 -
Cmo04g02485 443 ProSiteProfiles Peptidase family A1 domain profile. 55 416 IPR033121 -
Cmo04g02485 443 PANTHER ASPARTYL PROTEASES 8 145 IPR001461 GO:0004190|GO:0006508
Cmo04g02485 443 PANTHER ASPARTYL PROTEASES 146 360 IPR001461 GO:0004190|GO:0006508
Cmo04g02485 443 SUPERFAMILY Acid proteases 47 361 IPR021109 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02485 - - - csv:101218408 663.299
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g02485 Cmo09g00773 CCT
Cmo04g02485 Cmo09g00773 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00001 Cmo-Chr2:13644 Cmo04g02485 Cmo-Chr4:18319504 1.57E-120 dispersed
Cmo04g02485 Cmo-Chr4:18319504 Cmo13g01071 Cmo-Chr13:8887550 7.92E-80 dispersed
Cmo04g02485 Cmo-Chr4:18319504 Cmo09g00773 Cmo-Chr9:3928119 4.55E-115 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g246 Blo01g01299 . . . . Bpe04g00164 . . Cmo04g02485 . . Cma09g00782 . . Sed03g0772 Cpe06g00616 . Bhi04g01897 Tan11g1261 Cmetu03g0048 . . . Lcy10g1235 Cla08g00605 Cam08g1018 Cec08g0608 Cco08g0719 Clacu08g0729 . Cre08g0537 Cone4ag1418 Cone7ag1520 . . Lsi04g02403 Csa04g01787 . Cme03g00531 . . . . . . . . Sed01g0005 . Cmo09g00773 . . Car04g02299 Car09g00691 Cpe01g02060 . Bhi09g02697 Tan01g4045 Cmetu07g0745 . Hepe01g2297 Mch11g0842 . Cla11g01544 Cam11g1608 Cec11g1636 Cco11g1638 Clacu11g1766 Cmu11g1582 Cre11g1999 Lsi08g00444 . Chy07g00625 Cme07g00832
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001489 0 2 1 0 0 1 3 2 1 2 2 3 2 3 3 2 3 3 2 3 2 2 2 3 2 3 3 6 7 1 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g02485 Cmo_Chr04 FPKM 15.677489 17.797674 15.113276 14.581758 20.419317 23.55003 20.294558 18.006618 21.011395 19.787872