Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02487 ATGTCGGAAGTAATTACTGTCATTGATATGGACGACGACGATGACAACAACGAAGCTGAAAAGCGAGTCAAGGGCAACAATGTCGCCAATCCTGCCGCCGTACCTGACGGCAAAGCGATACCCTGGGTCGAGAAGTTTCGGCCTAAGTCTCTTGACGACGTTGCTGCTCACCGCGACATTGTTGACACCATTGACAAGCTGACCAGTGAGAATAGGCTGCCACATCTCCTGTTGTACGGCCCTCCTGGCACTGGCAAGACATCCACCATTCTAGCAGTTGCCCGCAAGCTTTATGGAGCAAACTACCACAAGATGATACTCGAGCTGAACGCATCAGATGATAGAGGGATAGATGTTGTCAGACAGCAGATTCAGAATTTTGTCAGTACTCAAAGCTTTTCATTTGGGGTTAAACCATCTGTAAAATTGGTACTTCTGGACGAGGCAGATGCCATGACTAAAGATGCACAGTTTGCTTTACGTAGAGTAATTGAGAAATATACAAAAGGTACAAGGTTTACTCTTATATGTAATCACGTAAATAAGATTATTCCCGCTTTACAATCAAGATGTACCCGCTTCCGATTTGCTCCCCTCGATAACTTTCATGTCACCGAACGACTCAGATATGTTATTGAGGCTGAGAGGTATGAGCAAACGTTCAAAGTCTTTGATGGCTGGTATCTACGGTATATTGATGTGCAAGGGTTGGACGTCTCTGAGAGTGGCTTAGCAGCCCTTGTTCGACTTTGTGGTGGTGATATGAGAAAGGCTTTAAATATTCTGCAGTCAACGCATATGGCTTCTCATCATATTACTGACGAGGCTGTATACCTATGTACAGGAAATCCAATGCCCAAAGACATAGAACAAATATCATTTTGGCTGCTGAATGAACCATTTTCTGACAGTTTTAAGAGAATATCTGAAATAAAGACCAGAAAAGGATTAGCTTTGGTTGATATAGTGAGAGAAGTCACTATGTTTGTTTTTAAGATCAAGATGCCATCGGAAGTCAGAGTTCAGTTGATTAATGATCTGGCTGACATAGAGTACAGAATGAGTTTTGGATGCAACGACAAATTACAACTCGGATTGCTCATCTCATCGTTTACTCAAGCCAGATATGCACTCGTTGGTGCTGCAGATTAG 1152 43.06 MSEVITVIDMDDDDDNNEAEKRVKGNNVANPAAVPDGKAIPWVEKFRPKSLDDVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGANYHKMILELNASDDRGIDVVRQQIQNFVSTQSFSFGVKPSVKLVLLDEADAMTKDAQFALRRVIEKYTKGTRFTLICNHVNKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERYEQTFKVFDGWYLRYIDVQGLDVSESGLAALVRLCGGDMRKALNILQSTHMASHHITDEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALVDIVREVTMFVFKIKMPSEVRVQLINDLADIEYRMSFGCNDKLQLGLLISSFTQARYALVGAAD 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18328007 18332394 + CmoCh04G024870.1 Cmo04g02487 381462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02487 383 Pfam Replication factor C C-terminal domain 284 369 IPR013748 -
Cmo04g02487 383 Gene3D - 284 379 - -
Cmo04g02487 383 CDD AAA 60 198 - -
Cmo04g02487 383 SUPERFAMILY post-AAA+ oligomerization domain-like 284 374 IPR008921 GO:0003677|GO:0006260
Cmo04g02487 383 Pfam ATPase family associated with various cellular activities (AAA) 76 196 IPR003959 GO:0005524|GO:0016887
Cmo04g02487 383 PANTHER REPLICATION FACTOR C SUBUNIT 5 36 377 - -
Cmo04g02487 383 SMART AAA_5 72 202 IPR003593 -
Cmo04g02487 383 Gene3D - 36 198 IPR027417 -
Cmo04g02487 383 Gene3D - 230 283 - -
Cmo04g02487 383 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 277 IPR027417 -
Cmo04g02487 383 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 36 377 - -
Cmo04g02487 383 CDD HLD_clamp_RFC 203 281 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g02487 Cmo15g00675 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02487 Cmo-Chr4:18328007 Cmo16g01059 Cmo-Chr16:7436229 2.71E-58 dispersed
Cmo15g00675 Cmo-Chr15:3298109 Cmo04g02487 Cmo-Chr4:18328007 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02487 K10756 - csv:101217230 628.632