Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02499 ATGGCAAGTAGTCAACAGAAGGAAGCACAGATGAGTACGGTGGCGACACCGTCCTTTGGCGGCGGCAGCAATCGCATAGCGGCGGTGAACACGGCGGAGACAACTACGATTCCGGCCGACGCCGTGAAAACACAAAATCACCGAGAAGAACCAACCACCACCGATCAGAAACCTGGATGGAGAAAGTTTCTTTCACACGTTGGCCCTGGTTTCCTCGTGTCATTGGCTTACCTTGATCCTGGCAACTTGGAAACCGACTTGCAGGCTGGGGCAAATCACGGATTCGAGCTTTTGTGGGTGGTGCTTATCGGATTAATATTTGCGCTCATAATTCAATCCCTTGCTGCAAATCTTGGCGTAAGCACCGGAAAACACCTTTCAGAAGTGTTGATAGGAACGGCCTTTGCCCTGAATATTCTATTCCATATTCCGGTTTGGGCTGGAGTTCTTCTCACCGGTTTAAGCACCCTCTTGCTCATAGGGCTCCAGAGATACGGGGTGAGGAAGCTGGAATTGCTGATAGCGATTTTGGTGTTTGTAATGGCGGCGTGTTTCTTCGGGGAAATGAGCTACGTTAAGCCGCCGGCGACCGGAGTTTTGAAAGGAATGTTTGTACCGAAATTGAATGGGCAGGGTGCCACCGGCGACGCCATTGCTCTCCTCGGCGCTCTGGTTATGCCGCACAATCTGTTTCTTCATTCGGCTCTCGTGCTGTCAAGGAAAGTGCCAAATTCTGTCCGTGTTTCTGGCACCGTCTGTACGGTCGGCCATGTCTCTGAATCCACCGCCGATCAGTGCTCCGACATCACCCTCAACTCCGCCTCCTTCCTCCTCCAGAATGTGCTGGGAAAATCGAGCTCCACCATTTACGCCATAGCCTTGCTTGCCTCCGGACAAAGCTCCAGCATCACCGGCACTTACGCCGGACAGTTCATCATGCAGGGATTTTTGGACCTGAAAATGAAAACATGGATGAGGAACCTTATGACCAGATCCATTGCCATTACGCCCAGTCTCATTGTCGCCATTATCGGTGGACCTCAAGGAGCTGGACGTCTCATCATTATCGCATCGATGATCCTTTCCTTCGAGCTTCCATTCGCTCTAATTCCGCTTCTCAAATTCAGTAGCAGCACCACCAAGATGGGCCCCCACAAGAATTCCATATACATCATTGTAATCTCATGGATATTGGGCCTATCAATCATCGGCATCAATATCTATTATCTCAGTACGGGCTTCGTGGGCTGGCTTATCGACAACAATTTACCCAAAGTTGCTAATGTATTCATTGGGATCGTTGTATTTCCTTTGATGGCCGTTTATATTCTTGCTGTTATTTACTTAACGTTCCGAAAGGATAGGGTTGTGACTTACATTGAGCCCCAAAAGCCCGACCCGATGGCCCAAGCCCATTTGGAAAGTGGGCTGCATAATTCTTTTGGGCCTGGTGACGTCGCCCCGGTTCCTTTTAGAGACGATTTGGCCCATATTCCACTTCCAGAGTAA 1509 49.97 MASSQQKEAQMSTVATPSFGGGSNRIAAVNTAETTTIPADAVKTQNHREEPTTTDQKPGWRKFLSHVGPGFLVSLAYLDPGNLETDLQAGANHGFELLWVVLIGLIFALIIQSLAANLGVSTGKHLSEVLIGTAFALNILFHIPVWAGVLLTGLSTLLLIGLQRYGVRKLELLIAILVFVMAACFFGEMSYVKPPATGVLKGMFVPKLNGQGATGDAIALLGALVMPHNLFLHSALVLSRKVPNSVRVSGTVCTVGHVSESTADQCSDITLNSASFLLQNVLGKSSSTIYAIALLASGQSSSITGTYAGQFIMQGFLDLKMKTWMRNLMTRSIAITPSLIVAIIGGPQGAGRLIIIASMILSFELPFALIPLLKFSSSTTKMGPHKNSIYIIVISWILGLSIIGINIYYLSTGFVGWLIDNNLPKVANVFIGIVVFPLMAVYILAVIYLTFRKDRVVTYIEPQKPDPMAQAHLESGLHNSFGPGDVAPVPFRDDLAHIPLPE 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18379971 18383985 - CmoCh04G024990.1 Cmo04g02499 381474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02499 502 MobiDBLite consensus disorder prediction 1 58 - -
Cmo04g02499 502 MobiDBLite consensus disorder prediction 1 42 - -
Cmo04g02499 502 Pfam Natural resistance-associated macrophage protein 130 242 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cmo04g02499 502 Pfam Natural resistance-associated macrophage protein 84 129 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cmo04g02499 502 Pfam Natural resistance-associated macrophage protein 268 388 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cmo04g02499 502 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 53 129 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cmo04g02499 502 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 131 247 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cmo04g02499 502 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 246 502 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cmo04g02499 502 PRINTS Natural resistance-associated macrophage protein signature 298 317 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cmo04g02499 502 PRINTS Natural resistance-associated macrophage protein signature 142 161 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cmo04g02499 502 PRINTS Natural resistance-associated macrophage protein signature 326 343 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cmo04g02499 502 PRINTS Natural resistance-associated macrophage protein signature 358 377 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cmo04g02499 502 PRINTS Natural resistance-associated macrophage protein signature 114 140 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cmo04g02499 502 PANTHER METAL TRANSPORTER NRAMP5 246 502 - -
Cmo04g02499 502 PANTHER METAL TRANSPORTER NRAMP5 53 129 - -
Cmo04g02499 502 PANTHER METAL TRANSPORTER NRAMP5 131 247 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00191 Cmo-Chr1:827593 Cmo04g02499 Cmo-Chr4:18379971 4.62E-168 dispersed
Cmo04g02499 Cmo-Chr4:18379971 Cmo20g00989 Cmo-Chr20:5643440 1.03E-76 dispersed
Cmo04g02499 Cmo-Chr4:18379971 Cmo14g01073 Cmo-Chr14:5910482 6.03E-175 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02499 K21398 - csv:101219356 819.69