Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02500 ATGCCTGCCCATAATCGCCGCTCGTCGTTTTCGTCGTCGACGTCCTCGTCGTTGGCTAAACGACAAGCGTCCTCGGCTTCCTCGACCAACAATGTCGGGAAAGTTATGGTGGTTCCGCCGCATTTGGCGAAGAAACGAGCTCCACTTGGTAACTTAACGAATCTTAAGAATGCGTCTCATAGTGCTGCGAAAAGCTCTGTTCCGCCCCCTGTTTTGGTACCCTGTGCAACCAAAGCTGTCAAGACCAGAAAGACACCGACATTGCTCGATGTCAAAACGACCAGTGTAGTTGTCCCTAGCAATGTCACAACATTATCAAGAACTGATGCGATTGCTGTCTCAAGTAGTATGGCTGTCTCTCCAACTAAATCAGATGGAGCTTCAGTTTCCATGGATGAAACTATGTCTACTTGTGATTCTTTTAAGAGTCCCGACGTCGAGTATGTGGACAATAACGACGTCCCAGCAGTAGATTCTGTTGAGAGGAAAACTAAAAGCAGTCTCTGCATTTCAGGTCACGTACCAATTAAAGGAAGCATATGCAACAGAGATGTACCAGCAGAAATGGAAACAGATGGCTGCATCATTGATGTTGATACTGATTTCATGGATCCACAACAATGTGCTACAATTGCTTGTGATATTTACAATCACTTGCGAGCATCTGAGGCAAAGAAAAGGCCTTCTACGGATTTCATAGAAAAAGTTCAGAAGGATATAAATTCAAATATGCGAGCCATACTGATTGATTGGCTCGTGGAGGTAGCAGAAGAGTACAGGCTTGTGCCTGATACTCTTTACTTGACTGTGAACTACATCGATCGATACCTATCGGGGAATTCGATGGATCGACAACGGTTACAGCTGCTTGGTGTTGCTTGCATGATGATTGCTTCAAAATATGAAGAGATCTGTGCACCTCAAGTGGAAGAATTTTGTTACATAACTGATAACACATACTTCAAAGAAGAGGTTTTGCAAATGGAATCATCTGTCTTGAATTACTTGAAGTTTGAAATGACAGCTCCAACACCCAAATGTTTTTTAAGACGATTTGTTCGTGTTGCTCGAGGCGTCGATGAGGTTTCATCGATGCAGTTGGAGTGCTTGTCGAACTTCATCGCTGAATTGTCTCTTTTAGAATACAATATGCTCTGCTACGCCCCGTCGCTCATAGCTGCCTCAGCGGTTTTCTTGGCGAAGTTCATTCTTCTCCCGACTAAGAGACCATGGGACCTCACCTTGCAACATTACACACATTACCAGCCATCCGATCTCGTCGACTGTGTTAAGGATTTGCATCGCCTCTGCTGTAACAGCCATAGTTCAAGCTTACCAGCAATCAGAGAGAAATACAGCCAGCATAAGTACAAACATGTGACAACCAAGTACTGCCCTCCGACAATACCGACCGAGTTTTTCCAGAATCGAACGCAGTAG 1440 44.65 MPAHNRRSSFSSSTSSSLAKRQASSASSTNNVGKVMVVPPHLAKKRAPLGNLTNLKNASHSAAKSSVPPPVLVPCATKAVKTRKTPTLLDVKTTSVVVPSNVTTLSRTDAIAVSSSMAVSPTKSDGASVSMDETMSTCDSFKSPDVEYVDNNDVPAVDSVERKTKSSLCISGHVPIKGSICNRDVPAEMETDGCIIDVDTDFMDPQQCATIACDIYNHLRASEAKKRPSTDFIEKVQKDINSNMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNSMDRQRLQLLGVACMMIASKYEEICAPQVEEFCYITDNTYFKEEVLQMESSVLNYLKFEMTAPTPKCFLRRFVRVARGVDEVSSMQLECLSNFIAELSLLEYNMLCYAPSLIAASAVFLAKFILLPTKRPWDLTLQHYTHYQPSDLVDCVKDLHRLCCNSHSSSLPAIREKYSQHKYKHVTTKYCPPTIPTEFFQNRTQ 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18395584 18398522 + CmoCh04G025000.1 Cmo04g02500 381475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02500 479 Gene3D - 214 462 - -
Cmo04g02500 479 SMART Cyclin_C_2 343 466 IPR004367 -
Cmo04g02500 479 CDD CYCLIN 244 333 IPR013763 -
Cmo04g02500 479 ProSitePatterns Cyclins signature. 245 276 IPR006671 -
Cmo04g02500 479 SMART cyclin_7 250 334 IPR013763 -
Cmo04g02500 479 SMART cyclin_7 347 435 IPR013763 -
Cmo04g02500 479 PIRSF Cyclin_A_B_D_E 5 473 IPR039361 -
Cmo04g02500 479 SUPERFAMILY Cyclin-like 204 340 IPR036915 -
Cmo04g02500 479 CDD CYCLIN 341 434 IPR013763 -
Cmo04g02500 479 Pfam Cyclin, C-terminal domain 343 462 IPR004367 -
Cmo04g02500 479 Gene3D - 228 341 - -
Cmo04g02500 479 SUPERFAMILY Cyclin-like 343 469 IPR036915 -
Cmo04g02500 479 PANTHER CYCLINS 84 477 IPR039361 -
Cmo04g02500 479 MobiDBLite consensus disorder prediction 1 34 - -
Cmo04g02500 479 Pfam Cyclin, N-terminal domain 214 340 IPR006671 -
Cmo04g02500 479 PANTHER CYCLIN-A1-1 84 477 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g02500 Cmo15g00668 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02500 Cmo-Chr4:18395584 Cmo09g00266 Cmo-Chr9:1172689 8.93E-107 dispersed
Cmo11g01399 Cmo-Chr11:9837969 Cmo04g02500 Cmo-Chr4:18395584 5.92E-71 dispersed
Cmo15g00668 Cmo-Chr15:3266992 Cmo04g02500 Cmo-Chr4:18395584 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02500 K06627 - csv:101221569 813.142