Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02505 ATGTTCTATCACACATCACCATTCTCATTCCATCCCTCAAAATTTTCTTCCCCTCTCCCTCCTCCTCTCTTACGCTCGGGTTTCATTTATCGACCCGCGAAAAGCCAACGAAAAAAGAAGCCATTTTTATACACAACGAGCTCACCAAACTGTACATGTTGTTATGTTGCTTCGTGTGGCACTTGGACGCCATCGCCCTCGGTTATGAATCGCTCTTTACCAGCCACCGTGATCCATTCCTATCCCTATCTTTCCCCTTTTCGTCCTCTCCTTCCTTCCTCTAATAATGCCAGATTTCTCGGCTTTCAATTGCACACATGGAAGCGATTCAGGAGGCGGCTTAAGTTTGCTGTCACTGCGGAGCTCTCCAAGTCTGTATCCTTTAATTCTGCCTCCGAATTTCAGTTATCATGGATGGGTCCTGTTCCTGGCGATGTTGCTGAAGTTGAGGCATATTGTAGAATCTTTAGAACTGCTGAGCGACTCCACTCTGTGCTGATGGATACTCTTTGCAATCCTTTCACTGGTGAATGTAGCGTTTCGTACGATGTTACTCCAGGGGAAAATCCAGTAATTGAGGATAAAATAGTGTCTGTACTTGGTTGCATAGTATCGCTTCTAAACAAAGGAAAGGAGGATGTACTCTCAGGAAGATCATCTGCCATGAATGCTTTCCGGGGTGACAATTTAGATGCAATGGAGGATAATCTTCCTCCACTTGCTGCCTTTAGGAGTGAGATGAAAAGGTGTTGTGAAAGCTTGCATGTTGCTCTTGAAAACTTTTTGACTCCTGATGACGACCGGAGTTGGGATGTATGGAGGAAACTTCAGAGGCTGAAGAATGTCTGTTATGATTCTGGTTTTCCTAGAGGGGAGGATTATCCCTGCCATACATTGTTTGCCAATTGGAATCCTGTTTATCTACATAACTCCAAGGAAGAAGTGTCCGCCAAAAATTCTGATGTGTCCTTTTGGAGTGGTGGTCAGATAACAGAAGAAGGTCTGAAGTGGTTAATTGAGAGAGGATTTAAAACGATTGTTGATCTTAGAGCAGAGACAGTGAAGGATATATTCTATAGTGCATCCTTACATGATGCTATTGGTTCTGATAAAGTTAAAGTGATCAGAATTCCTGTTGAAGTTAGGACTGCACCAACAGCAGATCAGGTCGAGAAGTTTGCATCGTTGGTTTCAGATGGCAGCAATGGGCTGATCTATCTTCATAGTAAGGAGGGCTTGTGGAGAACATCGGCCATGATATCTAGATGGAGGCAATATGCGACTCGCAGTGGATCACAGTTCGTCTCTAATCAGACAATTGTTCCAGCCGATATTCCCCTTGGAGACACCTCTCCCAAATTGGTACAAAATCCAGATGGAGCAAAAGAATCTCTGGAAATTTCTACAGTTGAAAAAACATCTTCATGCGATGAAAACAGTCGATCTTTGCTGCTAGAAAGTGCTGATCATTGTTCAATTAACAGAAAAAATAATACAGAAGCTGATAAAATTATTCAGAATGAAAATGGAGCTTTCAACGGGTCTATTCCTACACAAGATCTGACATCTTTAAGAGCAGATCATAATGGGGAAGAGCATCTGTCTCAATTTAGCGTTGCAACTGACCCTTTGAAAGCTCAGATTCCTCCATGCAATATTTTCTCAAGAAAAGAAATGTCCAACTTTTTTAGGACCAAAAAGATTTCTCCTCAAAACTACTTGCACCGTAAAATGAAAACAAATGAAAAACGGCCACCTTCTACGGAGTTACCTATGAGCAGAGTTCAAAAATTTAGTGTTGACAATAGTGATCTTAAATCTGGGCTTGTTGAAGCAGGAAACACTAATGGCAGGCCAAGTGTGAAAGAGACGTCCTCAACGACTCATTATTTATCTACTACAAATATGAGGTATGTAAATGGTGATAGTCATGTATCTTCCAATCCTGTTCATAATGAACTTGGAGTGGATGGAAGGAATCCTCTGATGACTGAAGCCTCTACTGCTGTTGGAGATAAATTTCAGTCTAAAGCAGAAACAAACAGCTTAAAGAGCAATGGTCAAGCAACTTCAGTTTCTAGCAATGATGAAATGGAATCTGTCGAGGGAAATATGTGTGCTTCTGCCACTGGTGTTGTAAGGGTGCAATCAAGAAGGAAAGCTGAAATGTTTTTAGTTCGGACAGATGGGTTCTCATGTGCCAGAGAAAAAGTGACCGAATCATCTTTGGCCTTTACTCATCCTAGTACCCAGCAACAGATGCTCATGTGGAAATCCACTCCCAGGACTGTATTACTTCTGAAAAAGCTGGGTGAAGAGCTGATGGAAGAAGCTAAAGAGGTAGCCTCGTTCATGTATCATCAAGAGAAGATGAATGTTCTTGTGGAACCTGACGTACATGACATATTTGCAAGAATTCCAGGGTTTGGATTTGTCCAAACCTTTTATAGTCAAGACACCAGTGACCTACATGAGAAAGTTGATTTTGTGGCCTGCTTAGGTGGAGATGGGGTTATTCTCCATGCATCAAATATATTTAGAGGTGCTGTTCCCCCTGTTGTTTCGTTTAATCTCGGCTCTCTTGGATTTTTGACTTCCCACACTTTTGATAGTTATAGGCAGGACTTAAGACAAGTCATTCATGGAAATGATTCACTGGATGGTGTCTATATAACTCTAAGAATGCGTCTTCAGTGTGAAATTTTTCGAAACGGCAAAGCTATTCCTGGAAAGGTATTTAATATTCTCAATGAGGTTGTTGTTGATCGAGGCTCCAATCCGTACCTTTCTAAAATTGAATGTTACGAACACGATCGTCTCATAACGAAGGTCCAGGGCGATGGAGTTATTGTGGCCACACCTACGGGAAGCACTGCTTACTCTACTGCAGCAGGGGGTTCTATGGTGCATCCGAATGTTCCTTGCATGCTTTTCACTCCAATCTGTCCCCATTCTCTCTCATTTAGACCAGTTATACTTCCCGACTCAGCACGACTCGAGTTAAAGATTCCCGAGGACGCCCGAAGTAATGCATGGGTTTCGTTCGATGGAAAGAGAAGGCAGCAACTCTCAAGAGGAGATTCTGTTAAGATATCCATGAGCAGGCATCCACTCCCAACAGTAAACAAGTCTGACCAAACTGGTGATTGGTTTCGCAGCTTGATTCGGTGCCTGAACTGGAATGAAAGGCTTGATCAGAAGGCCCTTTGA 3210 42.52 MFYHTSPFSFHPSKFSSPLPPPLLRSGFIYRPAKSQRKKKPFLYTTSSPNCTCCYVASCGTWTPSPSVMNRSLPATVIHSYPYLSPFRPLLPSSNNARFLGFQLHTWKRFRRRLKFAVTAELSKSVSFNSASEFQLSWMGPVPGDVAEVEAYCRIFRTAERLHSVLMDTLCNPFTGECSVSYDVTPGENPVIEDKIVSVLGCIVSLLNKGKEDVLSGRSSAMNAFRGDNLDAMEDNLPPLAAFRSEMKRCCESLHVALENFLTPDDDRSWDVWRKLQRLKNVCYDSGFPRGEDYPCHTLFANWNPVYLHNSKEEVSAKNSDVSFWSGGQITEEGLKWLIERGFKTIVDLRAETVKDIFYSASLHDAIGSDKVKVIRIPVEVRTAPTADQVEKFASLVSDGSNGLIYLHSKEGLWRTSAMISRWRQYATRSGSQFVSNQTIVPADIPLGDTSPKLVQNPDGAKESLEISTVEKTSSCDENSRSLLLESADHCSINRKNNTEADKIIQNENGAFNGSIPTQDLTSLRADHNGEEHLSQFSVATDPLKAQIPPCNIFSRKEMSNFFRTKKISPQNYLHRKMKTNEKRPPSTELPMSRVQKFSVDNSDLKSGLVEAGNTNGRPSVKETSSTTHYLSTTNMRYVNGDSHVSSNPVHNELGVDGRNPLMTEASTAVGDKFQSKAETNSLKSNGQATSVSSNDEMESVEGNMCASATGVVRVQSRRKAEMFLVRTDGFSCAREKVTESSLAFTHPSTQQQMLMWKSTPRTVLLLKKLGEELMEEAKEVASFMYHQEKMNVLVEPDVHDIFARIPGFGFVQTFYSQDTSDLHEKVDFVACLGGDGVILHASNIFRGAVPPVVSFNLGSLGFLTSHTFDSYRQDLRQVIHGNDSLDGVYITLRMRLQCEIFRNGKAIPGKVFNILNEVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARLELKIPEDARSNAWVSFDGKRRQQLSRGDSVKISMSRHPLPTVNKSDQTGDWFRSLIRCLNWNERLDQKAL 1069
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18424226 18431778 - CmoCh04G025050.1 Cmo04g02505 381480

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02505 1069 PANTHER NAD/NADH KINASE FAMILY PROTEIN 114 1069 - -
Cmo04g02505 1069 Gene3D - 896 1036 IPR017437 GO:0003951|GO:0019674
Cmo04g02505 1069 SUPERFAMILY NAD kinase/diacylglycerol kinase-like 765 1064 IPR016064 -
Cmo04g02505 1069 MobiDBLite consensus disorder prediction 674 697 - -
Cmo04g02505 1069 Hamap NAD kinase [nadK]. 762 1060 IPR002504 GO:0003951|GO:0006741
Cmo04g02505 1069 MobiDBLite consensus disorder prediction 608 627 - -
Cmo04g02505 1069 Pfam ATP-NAD kinase C-terminal domain 916 1042 - -
Cmo04g02505 1069 Pfam ATP-NAD kinase N-terminal domain 795 882 IPR002504 GO:0003951|GO:0006741
Cmo04g02505 1069 Gene3D Protein tyrosine phosphatase superfamily 315 440 IPR029021 -
Cmo04g02505 1069 PANTHER NAD KINASE 114 1069 - -
Cmo04g02505 1069 Gene3D - 751 1061 IPR017438 -
Cmo04g02505 1069 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 324 426 IPR029021 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02505 K00858 ppnK, NADK; NAD+ kinase [EC:2.7.1.23] - csv:101204002 1666.36
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g02505 Cmo15g00662 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02505 Cmo-Chr4:18424226 Cmo10g00967 Cmo-Chr10:4869725 7.82E-79 dispersed
Cmo04g02505 Cmo-Chr4:18424226 Cmo15g00662 Cmo-Chr15:3231145 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g216 . . . . . . . . Cmo04g02505 Cmo15g00662 . . . . Sed01g3084 . . Bhi04g01869 Tan11g1240 Cmetu03g0963 . Hepe02g2213 . Lcy10g1253 Cla08g00622 Cam08g1036 Cec08g0626 Cco08g0737 Clacu08g0746 . Cre08g0554 Cone4ag1431 Cone7ag1504 . . . . . Cme03g00495 Blo17g00169 . . Bda13g01468 . Bpe14g00397 . Bma02g00204 . . . . . Car04g02311 Car15g00599 Cpe01g02074 . . . . . . . . . . . . . . . Lsi08g00462 . Chy03g00755 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007207 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g02505 Cmo_Chr04 FPKM 25.027002 24.21903 12.516362 13.23376 35.705658 36.12529 34.153397 11.111243 10.415643 10.291007