Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02506 ATGGAGGAGGAAAAATTTAGTGGCGGCGCTGGCGGTGGAGCTCGCACTGGGAATGGTGGTTCTGGTGATTTGTCCAGAGCTTCTTCTTCCTTTTTGAAATCGGGGGACCGGCAAATGTTCACTGTGGAGCTCCGACCGGGAGAGACCACCATAGTTTCGTGGAAGAAGCTTGTCAAAGATTCCAACAGGATTAATGGAGTGAACACTCTGCCTGTACCTCCAGCCAACCCCATCCCTGCCGTCGAGTGTCGCATTGATCCGGGACAATCAATTGAAGATGAAGTGAAAGATGCAACAGCACCAAATCGTTTCAATGCTGTTATTGAGAAGATTGAACGCCTATATATGGGTAAGGATAGTAGCGACGAGGAAGATTTAATTCCGGATGATGATCAGTATGATACAGAGGACTCATTCATCGATGATACCGAGTTGGATGAATATTTTGAAGTTGATAATTCGGCAATAAAACATGATGGATTTTTTGTTAATAGGGGGAAGTTGGAGCGCATAAGTGAACCAGCTGGACAACCTAATCAACAATTGAAGAAAAGGCGCAGAAAAGATATAGAGAAAGGACATCCTGATAACCATGATGCTCGCTCATCAAATAAGCACACAAAAGTGGGAAAGACAACTGTGGGAAAGAGTGCACTGATGGTTGCAAAGAGTTTTTCCAATCTGTCTCAAAACATGGTGGTCACCCATGAACATCATGATGATGAAAAATTGCAGAATCAATTGAATATGCCCGGTCATAGTGGCAAAAAAAAATCTGGTGATACGAAAATGATATTGGACCCTTCTCCATCTTCAAAAGTTTACAATGGTGATACCTCTACATCTGTAGCAGAAGCAAAGGACATTGATCCACTAAGGCCTGGTGTTTTACCATCCAAGAACGTTGCTAGCAAATTGAAAGAGTCATGTGGGCCATCTGATTCCTTACAACAGAATGTGCTTGAAAAAAGTGCTCTTGCACCATCCAAACCCCAACCTGGGAAACCGTTGAATAACACGGATGAGATAGATTTGTCAATTCAATTGAAAGAGAAACAAAGCATTCGTGAATTGCCAGACATCAATTTGCCAGAGGGAAAGTATTCCACACAAACAGCAAAAACACCGTATGTGCACAAGAAGGACGGTTCTAGTGTTAGACCGAAAAGCTCCCTGCTAGAAAAGGCTATAAGAGAGTTAGAGAAGATGGTTGCAGAATCTAGGCCACCACTTACGGAGAATCCAGAGGCAGACAATGCATCTCAGGCTATCAAAAGGAGATTGCCAAGAGAAATCAAACTCAAGCTTGCTAAAGTTGCTAGATTAGCGGCAAACCATGGGAAATTGTCAAAGGGGTTGATTAACCGACTTATGAGTATTCTTGGTCACTTGATACAACTGCGAACTCTAAAGAGAAATTTAAAAATCATGATCAATATGGGTATCTCAGTGAAGCAGGAGAAGGATGGTAGGTTTCAACAGATAAAGAAAGAAGTTGTCGAGATGATTAAAATCCGGCCTTTGTCTATGGAGACTAAGGCAATCGAACACCAAACGGGAGCACTTCACGATATCCGTGAACTTGTTTCTGAAGAAAAAGGAGTTCCGAGAAAGAAATTTGCTATGGATCCTGCATTGGAGGACAAGATTTGTGATCTCTACGATCTGTTTGTTGATGGACTGGATGAGGATGCTGGTCCACAAATTAGAAAGTTGTATGCCGAGCTTGCAGAATTATGGCCAAATGGGTTCATGGATAATCATGGGATCAAACGTGCAATATGTAGAGCAAAAGAAAGGCGGAGAGCGTTGCATGGTAAACACAAGGATCAGGAGAAAGTCAAGAAGAGAAAGATATTACCACCTAGAGTAGACGAGACTGTTAGAACCGAGGTCAGTTCAGTTGCTCGAGAGCGATTGGTCCCTGAATCCGTTTTACAGCCAGCCCTAGCAACCAAGCCTGTATCTGTTTCATCAGCTACAATGCCCCAGCTACCAAATGCTTCCATTAGTGTTGGAAATTTAGAAAGGCTAAAATCCGATAAGTTGAAGGGAAGCTCAAGCAGTTCCCATGAAGATGCGAGAATGGTCGACGGTGCGTTAACCAAGAAAAAGGCGAAAAGGAGGGCAGAGCTGGAGTTGGATGAAACTCATAATTGGCCCGAGAAGGCGCCCGTCCAACACGGAGACGAAAAACACAAGTCCAACAAGCCAACTGCCAGTCTTCCTCCCAAGGCAAACATTCAATCAGCTGCTCCTCCAAGTCTGGAACAGTCGAGCTAA 2283 43.67 MEEEKFSGGAGGGARTGNGGSGDLSRASSSFLKSGDRQMFTVELRPGETTIVSWKKLVKDSNRINGVNTLPVPPANPIPAVECRIDPGQSIEDEVKDATAPNRFNAVIEKIERLYMGKDSSDEEDLIPDDDQYDTEDSFIDDTELDEYFEVDNSAIKHDGFFVNRGKLERISEPAGQPNQQLKKRRRKDIEKGHPDNHDARSSNKHTKVGKTTVGKSALMVAKSFSNLSQNMVVTHEHHDDEKLQNQLNMPGHSGKKKSGDTKMILDPSPSSKVYNGDTSTSVAEAKDIDPLRPGVLPSKNVASKLKESCGPSDSLQQNVLEKSALAPSKPQPGKPLNNTDEIDLSIQLKEKQSIRELPDINLPEGKYSTQTAKTPYVHKKDGSSVRPKSSLLEKAIRELEKMVAESRPPLTENPEADNASQAIKRRLPREIKLKLAKVARLAANHGKLSKGLINRLMSILGHLIQLRTLKRNLKIMINMGISVKQEKDGRFQQIKKEVVEMIKIRPLSMETKAIEHQTGALHDIRELVSEEKGVPRKKFAMDPALEDKICDLYDLFVDGLDEDAGPQIRKLYAELAELWPNGFMDNHGIKRAICRAKERRRALHGKHKDQEKVKKRKILPPRVDETVRTEVSSVARERLVPESVLQPALATKPVSVSSATMPQLPNASISVGNLERLKSDKLKGSSSSSHEDARMVDGALTKKKAKRRAELELDETHNWPEKAPVQHGDEKHKSNKPTASLPPKANIQSAAPPSLEQSS 760
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18431820 18447794 - CmoCh04G025060.1 Cmo04g02506 381481

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02506 760 Pfam HPC2 and ubinuclein domain 119 169 IPR014840 -
Cmo04g02506 760 MobiDBLite consensus disorder prediction 681 760 - -
Cmo04g02506 760 MobiDBLite consensus disorder prediction 180 206 - -
Cmo04g02506 760 MobiDBLite consensus disorder prediction 235 280 - -
Cmo04g02506 760 PANTHER WOUND-RESPONSIVE FAMILY PROTEIN 25 760 - -
Cmo04g02506 760 MobiDBLite consensus disorder prediction 21 36 - -
Cmo04g02506 760 MobiDBLite consensus disorder prediction 363 388 - -
Cmo04g02506 760 MobiDBLite consensus disorder prediction 1 38 - -
Cmo04g02506 760 MobiDBLite consensus disorder prediction 681 738 - -
Cmo04g02506 760 PANTHER CAPZ-INTERACTING PROTEIN AND RELATED PROTEINS 25 760 - -
Cmo04g02506 760 MobiDBLite consensus disorder prediction 169 211 - -
Cmo04g02506 760 MobiDBLite consensus disorder prediction 740 760 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02506 - - - mcha:111011989 1251.11
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g02506 Cmo15g00661 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g00661 Cmo-Chr15:3217795 Cmo04g02506 Cmo-Chr4:18431820 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g214 . . . . . . . . Cmo04g02506 Cmo15g00661 . . . . . . . Bhi04g01866 . . . Hepe02g2212 . Lcy10g1255 Cla08g00624 Cam08g1038 Cec08g0628 Cco08g0738 Clacu08g0748 . Cre08g0556 . . Cone17ag0820 Cone20ag0424 . . . . Blo17g00168 Blo18g00174 . Bda13g01467 Bpe02g01656 Bpe14g00398 Bma01g00799 Bma02g00203 . . . . . Car04g02312 Car15g00598 Cpe01g02075 . . . . . . . . . . . . . . . Lsi08g00463 . Chy03g00754 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003468 4 3 2 2 2 1 2 1 1 1 2 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 4 1 1 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g02506 Cmo_Chr04 FPKM 7.824384 7.988527 3.1572 3.067375 17.324287 13.532354 17.941725 0.0 0.0 0.0