Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02508 ATGAGATTGCTCCAAAATGGGGTCGCCGGCGAGCCACTGCAAGTTGATTCCGGCCGTTCTGTGCTTGTGGGCATGAAATTAGACTCCCATAGTAGAGAGCTGCTAACTTGGGCTTTGGTTAAGGTCGCTCAACCGGGTGACCTTGTGATCGCTCTTCATGTTCTTGGCAACGATGAAATCGTTAATCGTGATGGGAAATCTTCGCTTCTTTCTCTTGTGAAAACGTTCGACTCTGTTCTTGCTGTTTATGAAGGTTTCTGTAACTTGAAGCAGGTGGATTTGAAGCTCAAAATCTGCAGGGGAGCATCGGCTAGAAAAATCTTAGTTCGTGAAGCAAAATCGTATTCTGCATCTAATTTAATTGTTGGGACTGCTCGAAAACACCATAAAATCCGTTCATCGAGTTCTGTTGCCAAGTACTGCGCTAAAAAATTGCCCAAACACTGTTGGGTACTCGCTGTTCATAATGGGAAAGTGACATTTGAACGAGCTGCAGTGGCTACAGGGGACTGCCAAGGTTTGTGTTATTTTCATTGTTTGAATTTGATTTCTGCAAATCTAATAGGAAATAAAGTTGAAAGTGATCTGGGAATTGGTAAGGATTCGGATCAGGGATTTGCAAAAGGCGTAATGGATAGTTCTTATAAACCGAACTGTTCGATTTGTGGATCGGAATCGAGTTCTTTGGTACAATCTGCAGTGATATCTTCTGGTGATGGAGATGAACATGATGAATCTTTAGCCATTGTTCCTGTTCAAAACGTTGAGGTAGCTTCGAGTTCAATTACTAAGTTGATCAAGGAATCGCCTGAAGTACAACCCGGTTGGCCTCTTCTTCGCCATGCTGATCAATCCGGTCGACGAGCTTCGTCCGACAAAGCCTTGGCCAAGCAAATCTCTGTAGTTCAATGGGCAATGAGGTTGCCTAACCGGTCTGCTTCAGACCCTGCTGCTTTGGATTGCAATTCTAATACATCTGGTCAAGCTACGGTTCTGGTCGGTTCTGAACCGGTGACTTCTTCGCTCTCCCCCAACCCCAGTTCCATACCGAAAGAATTGGAAGGTTTTCATGATAAATACTCGTCGTCGTGTAGATTGTTTAGTTATCAAGAACTCGTTACAGCAACGTCGAATTTCTTACCTCAAAACTTGATAGGGAAAGGAGGAAGCAGCCAGGTTTTTAGAGGTTGTCTTCCCGACGACAACGAGGTTGCTGTCAAGATCTTGAAGCCATCGGAAGACGTTCTAAACGAGTTTGCTGTGGAAATCGAGATCATTACGTCCTTACGCCACAAGAATATCATTTCTCTCTTGGGATTTTGCTTTGAAGATAGTAAATTCCTGTTGGTTTATGACTTCCTGTCAAGAGGATGCCTTGAAGATATCCTTCATGGGAATGGAAAGAGTTCGAACGCATTTGGCTGGTGCGAAAGATATAACGTAGCCGTCGGTGTAGCCGAGGCGTTGGATCATCTTCACAGCGACTCTCAGCACGTGATCCATAGGGACGTTAAATCGTCGAACGTTTTGTTATCTGACAATTTCGAACCGCAGTTATCAGATTTCGGGCTGGCGAAACGAGCATCAAAATCATCGCATGTAACCTGTACCGATGTTGCAGGAACGTTCGGTTATCTGGCTCCGGAGTATTTCATGTACGGTAAGGTAAGTGACAAGATTGATGTCTATGCTTATGGCGTGGTACTGCTTGAACTTCTTTCCGGGAGAAAACCGATAAGTACCGAGTATCCGAAAGGACAAGAAAGCCTAGTCATGTGGGCAAGGCCAATTTTAACCGACGGGAAGGTGTATCGGTTACTCGATCCTAACTTGGGAAGTAACTACAACAAGGACGAGATGGAGCGTGTCGTTTTAGCAGCTAGCCTTTGTATCAGACGCACTCCACGAGCTAGGCCTCCAATGAGCCATGTTCTAAAACTGCTCCAAGGCGATGTAGACGTAACCAAGTGGGCAAGGCAACAGATCAATGCTGTAGAGGATTGCAACGCTCTAGACGATGAAGTATGTCCTCGATCCGATATTCAATCACATCTCAACGTTGCATTGCTCGACGTTGATGACGACTCGCTCTCCCTGAGTAGCATCGAGCAGAGTATCTCAATGGAGGACTATTTGCAAGGAAGGTGGAGCCGTTCATCAGGGTTCGACTAA 2172 45.4 MRLLQNGVAGEPLQVDSGRSVLVGMKLDSHSRELLTWALVKVAQPGDLVIALHVLGNDEIVNRDGKSSLLSLVKTFDSVLAVYEGFCNLKQVDLKLKICRGASARKILVREAKSYSASNLIVGTARKHHKIRSSSSVAKYCAKKLPKHCWVLAVHNGKVTFERAAVATGDCQGLCYFHCLNLISANLIGNKVESDLGIGKDSDQGFAKGVMDSSYKPNCSICGSESSSLVQSAVISSGDGDEHDESLAIVPVQNVEVASSSITKLIKESPEVQPGWPLLRHADQSGRRASSDKALAKQISVVQWAMRLPNRSASDPAALDCNSNTSGQATVLVGSEPVTSSLSPNPSSIPKELEGFHDKYSSSCRLFSYQELVTATSNFLPQNLIGKGGSSQVFRGCLPDDNEVAVKILKPSEDVLNEFAVEIEIITSLRHKNIISLLGFCFEDSKFLLVYDFLSRGCLEDILHGNGKSSNAFGWCERYNVAVGVAEALDHLHSDSQHVIHRDVKSSNVLLSDNFEPQLSDFGLAKRASKSSHVTCTDVAGTFGYLAPEYFMYGKVSDKIDVYAYGVVLLELLSGRKPISTEYPKGQESLVMWARPILTDGKVYRLLDPNLGSNYNKDEMERVVLAASLCIRRTPRARPPMSHVLKLLQGDVDVTKWARQQINAVEDCNALDDEVCPRSDIQSHLNVALLDVDDDSLSLSSIEQSISMEDYLQGRWSRSSGFD 723
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18481789 18485223 + CmoCh04G025080.1 Cmo04g02508 381483

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02508 723 PANTHER OS08G0249100 PROTEIN 13 706 - -
Cmo04g02508 723 SUPERFAMILY Protein kinase-like (PK-like) 359 656 IPR011009 -
Cmo04g02508 723 SMART serkin_6 379 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g02508 723 ProSitePatterns Serine/Threonine protein kinases active-site signature. 499 511 IPR008271 GO:0004672|GO:0006468
Cmo04g02508 723 Pfam Universal stress protein family 19 151 IPR006016 -
Cmo04g02508 723 Gene3D Phosphorylase Kinase; domain 1 350 453 - -
Cmo04g02508 723 PANTHER - 13 706 - -
Cmo04g02508 723 Gene3D Transferase(Phosphotransferase) domain 1 454 667 - -
Cmo04g02508 723 Gene3D HUPs 18 157 IPR014729 -
Cmo04g02508 723 ProSitePatterns Protein kinases ATP-binding region signature. 385 407 IPR017441 GO:0005524
Cmo04g02508 723 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 19 155 - -
Cmo04g02508 723 Pfam Protein kinase domain 383 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g02508 723 ProSiteProfiles Protein kinase domain profile. 379 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02508 - - - csv:101203034 1093.57
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g02508 Cmo15g00658 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00255 Cmo-Chr2:1225995 Cmo04g02508 Cmo-Chr4:18481789 7.55E-147 dispersed
Cmo03g01044 Cmo-Chr3:7799451 Cmo04g02508 Cmo-Chr4:18481789 6.46E-10 dispersed
Cmo04g02508 Cmo-Chr4:18481789 Cmo20g01056 Cmo-Chr20:9746735 0 dispersed
Cmo19g00781 Cmo-Chr19:7846843 Cmo04g02508 Cmo-Chr4:18481789 8.62E-11 dispersed
Cmo15g00658 Cmo-Chr15:3185027 Cmo04g02508 Cmo-Chr4:18481789 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g209 . . . . . . . . Cmo04g02508 Cmo15g00658 . . . . . . . Bhi04g01860 . . . . . Lcy10g1259 Cla08g00627 . . . . . . . . Cone17ag0817 Cone20ag0422 . Csa04g01957 . Cme03g00489 Blo17g00166 Blo18g00172 . Bda13g01465 Bpe02g01658 . Bma01g00797 . . . . . . Car04g02316 Car15g00595 Cpe01g02077 . . . . . . . . . . . . . . . Lsi08g00467 . Chy03g00749 .
Vvi18g1149 . . . . . . . . Cmo04g02508 Cmo15g00658 . . . . . . Cpe13g00644 Bhi04g01860 . . . . . Lcy10g1259 Cla08g00627 . . . . . . . . Cone17ag0817 Cone20ag0422 . . . . . . . . . . . . . . . . . Car04g02316 . Cpe01g02077 . . . . . . . . . . . . . . . Lsi08g00467 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004130 2 1 2 2 1 1 2 1 1 1 1 1 2 1 0 2 1 1 2 1 1 1 1 1 1 1 1 0 3 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74305 PF00069 Pkinase 1.70E-44 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g02508 Cmo_Chr04 FPKM 2.900051 3.067204 0.50128 1.346468 3.700481 3.49809 2.356746 10.769581 11.933365 10.007271