Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02515 ATGGTGATGAAGATGAAACCCATCATGGCATTCTTGGTGATGATGAACATAGCCATATTTTCAGCACCCTTGGCCGTGGCAGCATCTCAGGCCTTACCCGGGTGTGAAGAACAGTGTGGCGACGTGCACATTCCATATCCATTCGGCATCAAAGAAAGGTGCTATCTCAATCAAAATTTCTCGATTACTTGCCACAAAACCGATCGCAACCGACCTCCAAAGGCAGAGGCGTTTCTAATGCATACCAATATTAGGGTTATGAATATATCTACTAATGGTGAGCTTCACGTGTTGCGGCCGATAGTGCGAAATTGTTACAGCTACGGAGATAATTATTTAGATATGAACGAAACGGATCTTTCTGTGCCGACCATGTACCCACTTTCTCGTTCCAAAAATAAGTTCATTACCATTGGGTGCAATCATGTTGGGTTAATCTTGGGGGATGACCAAGGGACTAACGTTGAAAGTGGGTGTATTTCGGTGTGTACGAGGAGAAGTAGTGTCGTTGATGGGTTGTGTTCTGGGAGTGGGTGCTGTCAGTTGGATATTCCAAAAGGGTTAACCAAATTGAGTTTGGCGGTGGGTGAGTTGTTGAATTACACTGAAATACGGAAATTCAGTCCCTGTGGGTATGCTTTTATAATTGAAGCTAGGAGGTTTCAGTTTTTGTCAAGTTATATTGATAAGTTTGAAGAGAAGGAAGTTGAGGCTGTGCTTAGTTGGGGCATTAGAAAAGCATTAAAACTTGATTGTGGACTAAACGCCAGAAGGAATAATAGTATCTTTAATGGAACTCATTATCGTTGCCACTGCTTGGATGGTTACGAGGGGAATCCATATCTCCATCACGGATGCCAAGATGTGGATGAATGCACGTATCCATGGCTGAATGACTGTGAGCACAAGAACAAGTGTTCTAACACCGAAGGAAACTATACCTGTCATTGTCCCAAGAACTTCCATGGAGATGGAAGAAAAGGCGGAAAAGGTTGCACCAAAAATTCCACCTCTTCCATTCCTATCATCATTGGAATTGGGTTAGGCCTCGCAGTTCTACTAATTGCCACCACAACCATATACTTATGCTACAAAAAGTTGAAGTTCATCAAACAAAAACAGCGCTTTTTCCACAAAAACGGAGGCTTTGTGCTTCAACGACAGCTTTCTCAATGCAATTCACCTAAAGACATCGTAAGAATCTTCAGCCAAGAAGAGTTGGAGAAGGCCACCAACAACTACGCCAAAGACACCATTGCTGGCAAAGGTGGCTACGGTACCGTTTACAAAGGTGTCTTGGACGATGGACTCACCGTTGCAATCAAGAAATCAAAATTCATGGACGAATCCCAAACATCCCAATTCATCAATGAAGTCGTTGTTCTTTCCCAAATCAACCATCGAAACGTGGTCAAGCTCTTAGGGTGCTGTTTAGAGACCCAAGTCCCATTGTTGGTGTACGAGTTCGTCACCAACGGCACCCTCTTCGATCATATCCATGACACTACCAAACACGTCCCTCTTTCTTGGGAAGCTCGGTTGAGAATCGCTTCGGAAACAGCTGGTGTCATTTCGTATTTGCATTCTTCAGCTTCTATTCCCATCATCCATAGAGATATCAAGACCACCAACGTACTTTTAGACGATAATTACACTGCAAAGGTTTCTGATTTTGGTGCTTCCAAGTTGGTTCCTAAGGATCACACTCAGCTAACCACGCTCGTGCAAGGGACTCTTGGGTACTTAGACCCTGAGTATTTATTGACGAGCGAGTTAACTGAGAAGAGTGATGTGTATAGCTTTGGAATTGTGCTTCTGGAACTTATAACGGGAAAGAAAGCGGTGAGGTTTGATGGGCCGGAAGAAGATCGAAACCTAGCCATGTATGTCCTTTATGTGGATGAATGCACGTATCCATGGCTGAATGACTGTGAGCACAAGAACAAGTGTTCTAACACCGAAGGAAACTATACCTGTCATTGTCCCAAGAACTTCCATGGAGATGGAAGAAAAGGCGGAAAAGGTTGCACCAAAAATTCCACCTCTTCCATTCCTATCATCATTGGAATTGGGTTAGGCCTCGCAGTTCTACTAATTGCCACCACAACCATATACTTATGCTACAAAAAGTTGAAGTTCATCAAACAAAAACAGCGCTTTTTCCACAAAAACGGAGGCTTTGTGCTTCAACGACAGCTTTCTCAATGCAATTCACCTAAAGACATCGTAAGAATCTTCAGCCAAGAAGAGTTGGAGAAGGCCACCAACAACTACGCCAAAGACACCATTGCTGGCAAAGGTGGCTACGGTACCGTTTACAAAGGTGTCTTGGACGATGGACTCACCGTTGCAATCAAGAAATCAAAATTCATGGACGAATCCCAAACATCCCAATTCATCAATGAAGTCGTTGTTCTTTCCCAAATCAACCATCGAAACGTGGTCAAGCTCTTAGGGTGCTGTTTAGAGACCCAAGTCCCATTGTTGGTGTACGAGTTCGTCACCAACGGCACCCTCTTCGATCATATCCATGACACTACCAAACACGTCCCTCTTTCTTGGGAAGCTCGGTTGAGAATCGCTTCGGAAACAGCTGGTGTCATTTCGTATTTGCATTCTTCAGCTTCTATTCCCATCATCCATAGAGATATCAAGACCACCAACGTACTTTTAGACGATAATTACACTGCAAAGGTTTCTGATTTTGGTGCTTCCAAGTTGGTTCCTAAGGATCACACTCAGCTAACCACGCTCGTGCAAGGGACTCTTGGGTACTTAGACCCTGAGTATTTATTGACGAGCGAGTTAACTGAGAAGAGTGATGTGTATAGCTTTGGAATTGTGCTTCTGGAACTTATAACGGGAAAGAAAGCGGTGAGGTTTGATGGGCCGGAAGAAGATCGAAACCTAGCCATGTATGTCCTTTGTGCAATAAAAGAAGACCGTTTTGAAGAAGTGGTGGAGAAGGGAATGGTGAGTGAGGCAAACATGGAGCAAATAAAGGAAGCGGCTAAGCTAGCAAGAGAGTGTGTAAGAATCAAAGGGGAGGAGAGGCCGAGCATGAAGGAAGTGGCTATGGAGTTGGAGGCGCTGCGAGCAACGAAGGGTGAGCATTCATGGGCCAATGTTAGGTTATCCGCCGCACAAGAGTCGAGCCCATTTGTTGAGGGTGGAAGTATGGGCGCTGTGGATGATAGCATAAAGCTGGAATTGCCACATGTCGAACATGGTAGATGA 3237 44.45 MVMKMKPIMAFLVMMNIAIFSAPLAVAASQALPGCEEQCGDVHIPYPFGIKERCYLNQNFSITCHKTDRNRPPKAEAFLMHTNIRVMNISTNGELHVLRPIVRNCYSYGDNYLDMNETDLSVPTMYPLSRSKNKFITIGCNHVGLILGDDQGTNVESGCISVCTRRSSVVDGLCSGSGCCQLDIPKGLTKLSLAVGELLNYTEIRKFSPCGYAFIIEARRFQFLSSYIDKFEEKEVEAVLSWGIRKALKLDCGLNARRNNSIFNGTHYRCHCLDGYEGNPYLHHGCQDVDECTYPWLNDCEHKNKCSNTEGNYTCHCPKNFHGDGRKGGKGCTKNSTSSIPIIIGIGLGLAVLLIATTTIYLCYKKLKFIKQKQRFFHKNGGFVLQRQLSQCNSPKDIVRIFSQEELEKATNNYAKDTIAGKGGYGTVYKGVLDDGLTVAIKKSKFMDESQTSQFINEVVVLSQINHRNVVKLLGCCLETQVPLLVYEFVTNGTLFDHIHDTTKHVPLSWEARLRIASETAGVISYLHSSASIPIIHRDIKTTNVLLDDNYTAKVSDFGASKLVPKDHTQLTTLVQGTLGYLDPEYLLTSELTEKSDVYSFGIVLLELITGKKAVRFDGPEEDRNLAMYVLYVDECTYPWLNDCEHKNKCSNTEGNYTCHCPKNFHGDGRKGGKGCTKNSTSSIPIIIGIGLGLAVLLIATTTIYLCYKKLKFIKQKQRFFHKNGGFVLQRQLSQCNSPKDIVRIFSQEELEKATNNYAKDTIAGKGGYGTVYKGVLDDGLTVAIKKSKFMDESQTSQFINEVVVLSQINHRNVVKLLGCCLETQVPLLVYEFVTNGTLFDHIHDTTKHVPLSWEARLRIASETAGVISYLHSSASIPIIHRDIKTTNVLLDDNYTAKVSDFGASKLVPKDHTQLTTLVQGTLGYLDPEYLLTSELTEKSDVYSFGIVLLELITGKKAVRFDGPEEDRNLAMYVLCAIKEDRFEEVVEKGMVSEANMEQIKEAAKLARECVRIKGEERPSMKEVAMELEALRATKGEHSWANVRLSAAQESSPFVEGGSMGAVDDSIKLELPHVEHGR 1078
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18523453 18528501 - CmoCh04G025150.1 Cmo04g02515 381490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02515 1078 Pfam Protein kinase domain 415 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g02515 1078 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 633 1052 - -
Cmo04g02515 1078 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 19 631 - -
Cmo04g02515 1078 ProSitePatterns Serine/Threonine protein kinases active-site signature. 879 891 IPR008271 GO:0004672|GO:0006468
Cmo04g02515 1078 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 633 1052 IPR045274 GO:0007166
Cmo04g02515 1078 SMART egfca_6 633 677 IPR001881 GO:0005509
Cmo04g02515 1078 SMART egfca_6 288 333 IPR001881 GO:0005509
Cmo04g02515 1078 Gene3D Transferase(Phosphotransferase) domain 1 834 1049 - -
Cmo04g02515 1078 Gene3D Transferase(Phosphotransferase) domain 1 490 665 - -
Cmo04g02515 1078 Gene3D Phosphorylase Kinase; domain 1 725 833 - -
Cmo04g02515 1078 Gene3D Phosphorylase Kinase; domain 1 381 489 - -
Cmo04g02515 1078 SUPERFAMILY Protein kinase-like (PK-like) 740 1026 IPR011009 -
Cmo04g02515 1078 ProSiteProfiles EGF-like domain profile. 632 668 IPR000742 -
Cmo04g02515 1078 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 650 661 IPR000152 -
Cmo04g02515 1078 CDD STKc_IRAK 765 1031 - -
Cmo04g02515 1078 SMART egf_5 291 333 IPR000742 -
Cmo04g02515 1078 SMART egf_5 247 287 IPR000742 -
Cmo04g02515 1078 SMART egf_5 635 677 IPR000742 -
Cmo04g02515 1078 Pfam Protein tyrosine and serine/threonine kinase 764 1028 IPR001245 GO:0004672|GO:0006468
Cmo04g02515 1078 ProSiteProfiles Protein kinase domain profile. 758 1041 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g02515 1078 SUPERFAMILY Protein kinase-like (PK-like) 395 634 IPR011009 -
Cmo04g02515 1078 ProSiteProfiles Protein kinase domain profile. 414 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g02515 1078 Gene3D Laminin 251 327 - -
Cmo04g02515 1078 ProSiteProfiles EGF-like domain profile. 288 324 IPR000742 -
Cmo04g02515 1078 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 306 317 IPR000152 -
Cmo04g02515 1078 SUPERFAMILY EGF/Laminin 287 324 - -
Cmo04g02515 1078 CDD EGF_CA 288 324 - -
Cmo04g02515 1078 SMART serkin_6 414 721 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g02515 1078 SMART serkin_6 758 1031 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g02515 1078 CDD EGF 635 670 - -
Cmo04g02515 1078 CDD STKc_IRAK 421 630 - -
Cmo04g02515 1078 Pfam Wall-associated receptor kinase galacturonan-binding 35 93 IPR025287 GO:0030247
Cmo04g02515 1078 ProSitePatterns Serine/Threonine protein kinases active-site signature. 535 547 IPR008271 GO:0004672|GO:0006468
Cmo04g02515 1078 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 19 631 IPR045274 GO:0007166
Cmo04g02515 1078 Pfam Calcium-binding EGF domain 288 325 IPR001881 GO:0005509
Cmo04g02515 1078 Pfam Calcium-binding EGF domain 633 669 IPR001881 GO:0005509
Cmo04g02515 1078 ProSitePatterns Calcium-binding EGF-like domain signature. 288 315 IPR018097 GO:0005509
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02515 Cmo-Chr4:18523453 Cmo04g02517 Cmo-Chr4:18535619 0 dispersed
Cmo04g02514 Cmo-Chr4:18516963 Cmo04g02515 Cmo-Chr4:18523453 1.59E-150 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74307 PF07714 PK_Tyr_Ser-Thr 6.90E-47 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02515 - - cmos:111460588 2083.15