Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02517 ATGGTGATGAACATCAAACCCATCATGGCATTCATGGTGATGATGATGAAGATAGCCATATTATCAACAGCCTTGGCCGTGGCAGCGTCTCAAGCCTTACCCGGGTGCGACGAATGGTGTGGCAAGGTGCACATTCCATATCCATTCGGCATCAAAAAAGGGTGCTATCTCAATCAAAACTTCTCGATCACTTGCCACAAAACCGATCGCAACCGACCTCCAAAGGCGCTTTTAATGCATACCAATATTAGTGTTATGAATATATCTACTAACGGTGAGCTTCATGTGTTGCGGCCGATAGTACGAAATTGTTACAGCCACGGAGATAATTATTTAGATATGAACGACGCGGATATTTCTGTGCCGGACATGTTCCCACTTTCTCGTTCCAAAAATAAGTTCATTACCATCGGGTGCAATCATGTTGGGTTAATCTTGGGGGATGACCAAGGGACTAACGATGAAAGTTGGTGTATTTCGGTGTGTACGAGGAAAAGTAGTGTCGTTGATGGGTTGTGTTCTGGGAGTGGGTGCTGTCAGTTGGATATTCCAAAAGGGTTCACCAAATTGAGTTTGGCAGTGGGTGAGCTGTTCAATTACCCTGAAGTACGGAAATTCAGTCCCTGTGGATATGCTTTTATAATTGAAGCTGCGAGGTTCAAGTTTTTGTCAAGGTATATTGATAAGTTTGAAGAGGAGGAAGTTGAGGTTGTGCTTAGTTGGGGCATTAGAAATCAATTAAAATTTGAATGTGGATCAAACACCACAAGGAATAGTATCTTTAATGGAACTCAATATCGTTGCAAATGCTTGGATGGTTACGAGGGGAATCCATATCTCCCTCACGGATGCCAAGATGTGGATGAATGCACGTATCCATGGCTGAATGACTGTGAGCACAAGAACAAGTGTTCTAACACCGAAGGAAACTATACCTGTCATTGTCCCAAGAACTTCCATGGAGATGGAAGAAAAGGCGGAAAAGGTTGCACCAAAAATTCCACCTCTTCCATTCCTATCATCATTGGAATTGGGTTAGGCCTCGCAGTTCTACTAATTGCCACCACAACCATATACTTATGCTACAAAAAGTTGAAGTTCATCAAACAAAAACAGCGCTTTTTCCACAAAAACGGAGGCTTTGTGCTTCAACGACAGCTTTCTCAATGCAATTCACCTAAAGACATCGTAAGAATCTTCAGCCAAGAAGAGTTGGAGAAGGCCACCAACAACTACGCCAAAGACACCATTGCTGGCAAAGGTGGCTACGGTACCGTTTACAAAGGTGTCTTGGACGATGGACTCACCGTTGCAATCAAGAAATCAAAATTCATGGACGAATCCCAAACATCCCAATTCATCAATGAAGTCGTTGTTCTTTCCCAAATCAACCATCGAAACGTGGTCAAGCTCTTAGGGTGCTGTTTAGAGACCCAAGTCCCATTGTTGGTGTACGAGTTCGTCACCAACGGCACCCTCTTCGATCACATCCATGACACTACCAAACGCGTCCCTCTTTCTTGGGAAGCTCGCTTGAGAATCGCCTCGGAAACAGCCGGTGTCATTTCGTATTTGCATTCTTCGGCTTCTATTCCCATCATCCATAGAGATATCAAGACCACCAACGTACTTTTAGACGATAATTACACTGCAAAGGTGTCTGATTTTGGTGCTTCCAAGTTGGTTCCTAAGGATCACACTCAGCTAACCACGCTCGTGCAAGGGACTCTTGGGTACTTAGACCCTGAGTATTTATTGACGAGCGAGTTAACTGAGAAGAGTGATGTGTATAGCTTTGGAATTGTGCTTCTGGAACTTATAACGGGAAAGAAAGCGGTGAGGTTTGATGGGCCGGAAGAAGATCGAAATCTAGCCATGTATGTCCTTTGTGCAATGAAAGAAGACCGTTTTGAAGAAGTGGTGGATAAGGGAATGGTGAGTGAGGCCAACTTTGAGCAAATAAAAGAAGTGGCTAAGCTAGCGAAAGAGTGTGTGAGAATCAAAGGGGACGATAGGCCGGACATGAAGGAAGTGGCTATGGAGTTGGAGGCGCTGCGAGCGACGAAGGGTGAGCATTCATGGGCCAATGTTAGGTTATCCGCCGCACAAGAGTCGAGCCCATTTGTTGAGAGTGGAAGTATGGGCGCTGTGGATGATAGCATAAAGCTGGAATTGCCACATGTCGAACATGGTAGATGA 2199 44.75 MVMNIKPIMAFMVMMMKIAILSTALAVAASQALPGCDEWCGKVHIPYPFGIKKGCYLNQNFSITCHKTDRNRPPKALLMHTNISVMNISTNGELHVLRPIVRNCYSHGDNYLDMNDADISVPDMFPLSRSKNKFITIGCNHVGLILGDDQGTNDESWCISVCTRKSSVVDGLCSGSGCCQLDIPKGFTKLSLAVGELFNYPEVRKFSPCGYAFIIEAARFKFLSRYIDKFEEEEVEVVLSWGIRNQLKFECGSNTTRNSIFNGTQYRCKCLDGYEGNPYLPHGCQDVDECTYPWLNDCEHKNKCSNTEGNYTCHCPKNFHGDGRKGGKGCTKNSTSSIPIIIGIGLGLAVLLIATTTIYLCYKKLKFIKQKQRFFHKNGGFVLQRQLSQCNSPKDIVRIFSQEELEKATNNYAKDTIAGKGGYGTVYKGVLDDGLTVAIKKSKFMDESQTSQFINEVVVLSQINHRNVVKLLGCCLETQVPLLVYEFVTNGTLFDHIHDTTKRVPLSWEARLRIASETAGVISYLHSSASIPIIHRDIKTTNVLLDDNYTAKVSDFGASKLVPKDHTQLTTLVQGTLGYLDPEYLLTSELTEKSDVYSFGIVLLELITGKKAVRFDGPEEDRNLAMYVLCAMKEDRFEEVVDKGMVSEANFEQIKEVAKLAKECVRIKGDDRPDMKEVAMELEALRATKGEHSWANVRLSAAQESSPFVESGSMGAVDDSIKLELPHVEHGR 732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18535619 18538984 - CmoCh04G025170.1 Cmo04g02517 381492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02517 732 ProSitePatterns Calcium-binding EGF-like domain signature. 286 313 IPR018097 GO:0005509
Cmo04g02517 732 SUPERFAMILY Protein kinase-like (PK-like) 394 680 IPR011009 -
Cmo04g02517 732 CDD EGF_CA 286 322 - -
Cmo04g02517 732 Gene3D Phosphorylase Kinase; domain 1 379 487 - -
Cmo04g02517 732 CDD STKc_IRAK 419 685 - -
Cmo04g02517 732 ProSiteProfiles EGF-like domain profile. 286 322 IPR000742 -
Cmo04g02517 732 ProSitePatterns Serine/Threonine protein kinases active-site signature. 533 545 IPR008271 GO:0004672|GO:0006468
Cmo04g02517 732 Pfam Protein tyrosine and serine/threonine kinase 418 682 IPR001245 GO:0004672|GO:0006468
Cmo04g02517 732 Pfam Wall-associated receptor kinase galacturonan-binding 36 92 IPR025287 GO:0030247
Cmo04g02517 732 Gene3D Transferase(Phosphotransferase) domain 1 488 704 - -
Cmo04g02517 732 ProSiteProfiles Protein kinase domain profile. 412 695 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g02517 732 Pfam Calcium-binding EGF domain 286 323 IPR001881 GO:0005509
Cmo04g02517 732 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 304 315 IPR000152 -
Cmo04g02517 732 SMART egfca_6 286 331 IPR001881 GO:0005509
Cmo04g02517 732 SMART serkin_6 412 685 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g02517 732 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 17 706 - -
Cmo04g02517 732 Gene3D Laminin 247 325 - -
Cmo04g02517 732 SUPERFAMILY EGF/Laminin 285 322 - -
Cmo04g02517 732 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 17 706 IPR045274 GO:0007166
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02514 Cmo-Chr4:18516963 Cmo04g02517 Cmo-Chr4:18535619 6.80E-151 dispersed
Cmo04g02515 Cmo-Chr4:18523453 Cmo04g02517 Cmo-Chr4:18535619 0 dispersed
Cmo04g02517 Cmo-Chr4:18535619 Cmo04g02519 Cmo-Chr4:18545050 0 dispersed
Cmo04g02517 Cmo-Chr4:18535619 Cmo04g02518 Cmo-Chr4:18540046 4.35E-88 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74308 PF07714 PK_Tyr_Ser-Thr 1.50E-47 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02517 - - cmos:111460594 1457.97