Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02519 ATGAAACACATCATGGCATTCATGGTGATGATAATGGAGATAGCCATATTATCAACAGCCTTGGCCATGGTAGCATCTCAAGCCTTACCCCAGTGTGACGACCGGTGTGGCGACGTGCATATTCCATATCCATTCGGCATCAAAGAAGGGTGCTATCTCAATCAAAATTTCTCGATCACTTGCAACAAAACCGATCGCAATGGACCTCCAAAGGCGTATCTAATGCAGACCAATATTAGCGTTACCAATATATCTACTAACGGTGAGCTTCACGTGTTGCAGCCGGTAGTGCGAACTTGCTACGACCAAGTAAATGGTAGTTTTGTTCCCAACGAATCCAATCTTTCTGTGCCGGCCATGTTCTCAATTTCTGGTACCAAAAACAAGTTCGTTACCATTGGGTGCAACACTCTTAGTGTAATCACTGGAAATCACCAAGGGAGTTTGTATGGAAGTGGGTGTATTTCGGTGTGTTTAAATAAGAGTAGTGTAGTTAATGGGCCGTGTTCTGGCAATGGGTGCTGTCAGTTGGAGTTTCCAAATGGGTTAACCAATTTGAGCGTGGCGGTGGGTGGGTTGTTGAATTTCACTGATGTAAGGACATTCAATCCCTGTGGGTATGCTTTTGTGATTGAAGAAGAGAAGAGGTTCGAGTTTTTGTCAAGTTATATTGAGAATTTTGAAGATGAGGAAGTTGAGGTTGTGCTTGATTGGGGCATTAGAAATGAAACAAGATTTGAATGTGGATCAAACACCACAAGGAGTAGTATCCTTGATGGAACTGAATATCGTTGCCAATGCTTGGATGGTTACGATGGGAATCCATATCTCCCTCAAGGATGCCAAGATGTGGATGAATGCGAGTATGCATGGCTGAATGACTGTGAGTACAAGGACAAGTGTGCTAACACTAAAGGAAACTATACCTGTCATTGTCCTAAGAACTTCCATGGAGATGGAAGAGAAGGCGGAGAAGGTTGCACCAAAAATTCCACCTCTTCCATTCCTATCATCATTGGGATTGGGGTAGGCCTCCCAGTTTTACTAATAGCCACCACAACCATCTACTTGGGTTACAAGAAATTGAAGTTCATCAAACAAAAACAGCTTTTCTTCCACAAAAATGGAGGCTTTGTGCTTCAACGACAGCTTTCTCAATGGAATTCACCAAACGACATGGTTAGAATTTTCAGCCAAGAAGAGTTAGAGAAGGCCACCAACAACTACGCCCAGGACACCATTGCTGGCAAAGGTGGCTTCGGTACTGTTTACAAAGGTGTCTTGGACGATGGACTCACCATTGCAATCAAGAAATCAAAATTCATGGACGAATCCCAAACATCACAGTTCATCAATGAAGTCATTGTTCTTTCCCAAATCAACCATCGAAACGTGGTCAAGCTCTTAGGGTGCTGTTTAGAGACCCAAGTCCCATTGTTGGTCTACGAGTTCGTCACCAACGGCACCCTCTTTGATCACATCCATGACACTACCAAACACGTCCCTCTTTCTTGGGAAGCTCGCTTGAGAATCGCTTCGGAAACAGCCGGTGTCATTTCGTATTTGCATTCTTCGGCTTCTATTCCCATTATCCACAGAGATATCAAGACGACCAACATACTTTTAGACGATAACTACACTGCAAAGGTGTCTGATTTTGGTGCTTCCAAGTTGGTTCCTATGGATCAAACTCAGCTAACCACGCTCGTGCAAGGGACTCTCGGGTACTTAGACCCTGAGTACTTATTGACGAGCGAGTTAACTGAGAAGAGTGATGTGTATAGCTTTGGAATTGTGCTTTTGGAGCTTATAACGGGGAAGAAAGCGGTGAGGTTTGATGGGCCGGAAGAAGATCGAAACCTAGCCATGTATGTCCTTTGTGCAATAAAAGAAGAGCGTTTGGAAGAAGTGGTGGAGAAGGGAATGGTGAGTGAGGCAAACATGGAGCAAATAAAGGAAGCGGCTAAGCTAGCAAGAGAGTGTGTAAGAATCAAAGGGGAGGAGAGGCCGAGCATGAAGGAGGTGGCTATGGAGTTGGAGGGGCTGCGGGCAACGAAGGGTGAGCATTCATGGGCCAATGTCAATTTATCCAGCGCAGAAGAGACGGTGTATTTGCTGGATGGAGCATCAGAGTCGAGCCAATTGGTTGGGAGTGGAAGTGTGGGCACTGTGGGGAATAGCATAAAGCTGGAAATAACACTAATGGAGCATGGTAGATGA 2220 44.91 MKHIMAFMVMIMEIAILSTALAMVASQALPQCDDRCGDVHIPYPFGIKEGCYLNQNFSITCNKTDRNGPPKAYLMQTNISVTNISTNGELHVLQPVVRTCYDQVNGSFVPNESNLSVPAMFSISGTKNKFVTIGCNTLSVITGNHQGSLYGSGCISVCLNKSSVVNGPCSGNGCCQLEFPNGLTNLSVAVGGLLNFTDVRTFNPCGYAFVIEEEKRFEFLSSYIENFEDEEVEVVLDWGIRNETRFECGSNTTRSSILDGTEYRCQCLDGYDGNPYLPQGCQDVDECEYAWLNDCEYKDKCANTKGNYTCHCPKNFHGDGREGGEGCTKNSTSSIPIIIGIGVGLPVLLIATTTIYLGYKKLKFIKQKQLFFHKNGGFVLQRQLSQWNSPNDMVRIFSQEELEKATNNYAQDTIAGKGGFGTVYKGVLDDGLTIAIKKSKFMDESQTSQFINEVIVLSQINHRNVVKLLGCCLETQVPLLVYEFVTNGTLFDHIHDTTKHVPLSWEARLRIASETAGVISYLHSSASIPIIHRDIKTTNILLDDNYTAKVSDFGASKLVPMDQTQLTTLVQGTLGYLDPEYLLTSELTEKSDVYSFGIVLLELITGKKAVRFDGPEEDRNLAMYVLCAIKEERLEEVVEKGMVSEANMEQIKEAAKLARECVRIKGEERPSMKEVAMELEGLRATKGEHSWANVNLSSAEETVYLLDGASESSQLVGSGSVGTVGNSIKLEITLMEHGR 739
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18545050 18548475 - CmoCh04G025190.1 Cmo04g02519 381494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02519 739 ProSitePatterns Calcium-binding EGF-like domain signature. 283 310 IPR018097 GO:0005509
Cmo04g02519 739 CDD STKc_IRAK 416 682 - -
Cmo04g02519 739 PIRSF SRK 50 184 IPR024171 GO:0004674
Cmo04g02519 739 PIRSF SRK 317 721 IPR024171 GO:0004674
Cmo04g02519 739 ProSitePatterns Serine/Threonine protein kinases active-site signature. 530 542 IPR008271 GO:0004672|GO:0006468
Cmo04g02519 739 ProSiteProfiles EGF-like domain profile. 283 322 IPR000742 -
Cmo04g02519 739 Gene3D Transferase(Phosphotransferase) domain 1 485 701 - -
Cmo04g02519 739 Pfam Wall-associated receptor kinase galacturonan-binding 32 88 IPR025287 GO:0030247
Cmo04g02519 739 SMART egfca_6 283 328 IPR001881 GO:0005509
Cmo04g02519 739 SUPERFAMILY Protein kinase-like (PK-like) 390 684 IPR011009 -
Cmo04g02519 739 ProSiteProfiles Protein kinase domain profile. 409 692 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g02519 739 Gene3D Laminin 242 327 - -
Cmo04g02519 739 SMART serkin_6 409 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g02519 739 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 13 704 - -
Cmo04g02519 739 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 301 312 IPR000152 -
Cmo04g02519 739 Gene3D Phosphorylase Kinase; domain 1 384 484 - -
Cmo04g02519 739 Pfam Protein tyrosine and serine/threonine kinase 415 679 IPR001245 GO:0004672|GO:0006468
Cmo04g02519 739 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 13 704 IPR045274 GO:0007166
Cmo04g02519 739 SUPERFAMILY EGF/Laminin 282 320 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01069 Cmo04g02519 CCT
Cmo04g02519 Cmo15g00654 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02517 Cmo-Chr4:18535619 Cmo04g02519 Cmo-Chr4:18545050 0 dispersed
Cmo04g02519 Cmo-Chr4:18545050 Cmo15g00654 Cmo-Chr15:3163820 0 dispersed
Cmo04g02518 Cmo-Chr4:18540046 Cmo04g02519 Cmo-Chr4:18545050 1.03E-83 tandem
Cmo04g02519 Cmo-Chr4:18545050 Cmo04g02520 Cmo-Chr4:18552116 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74309 PF07714 PK_Tyr_Ser-Thr 3.20E-47 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02519 - - cmos:111460594 1450.26