Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02520 ATGGGGCGACAAATCGAGACGCTCATTCGACTAATGACCACAAACATACTCATCCTATCACCGCTGGTTTACGCAGCAACGGCGGTAGCAGCATTTCAAGCCTTACCCGGGTGCGACGATCGGTGTGGCGACTTGCAGATTCCATATCCATTTGGCACTAGGGAAGGGTGTTACCTGAACAAAAATTTCTTGATTACCTGTAACACAACTCATGACGATCGCCCAACGCCATTTCTCCGGACCGGCAACATTCAAGTTACGAATATATCCATCTCCGGTGAGCTGCACATCTCAAACGTCGTGGCCAAAGATTGCTACCCCAAAAGCAATAGTCTTAAAGCACGTCCGTCCTCCGCCACTCTCAACTTATTAGAATTCACAGTTTCCAGTACCAAAAACAAGTTCACTGTTATTGGTTGTGATACTTACGCTTATCTTTCTGGCCTAATCGAGGGGCAAACCTATACAACAGGATGCATGGCGTTGTGTGATAATATCACCACCGTAAGAGATGGCGCCTGCTCAGGTAATGGGTGCTGTCAGCTGGACATCCCCAGCGGCTTAAAGGGTTTGAGATGTAGGGTGCAGAGCTTCAAAAATCATAGTAAGGTCTTGAGTTATAATCCATGTGGGTATGCCTTTGTGACTGAAGAAGACAAGTTTAATTTCTCGGGGGCTTATATTCGTAATTTCACACAAAAGAGAGTTCCGGCGGTGCTTGATTGGGGTATTAGTAATACCACTTGCTTGACGGCTAACAACGAAAGTAATTGTGTTTGTGGGCCCAATAGCATGAAGGTTACCTCTCTCCCCGATGGATCTGAGTATCGTTGTGGGTGCTTGGAAGGGTTTGAGGGTAATCCTTATCTTCCTCAAGGATGTCAAGATATTGATGAATGTAGGGATGAAAGGCTGAATGATTGCAAGTTTGAGTGTGTTAACACTGAAGGGAACTATACTTGTAATTGTCCGGAGGGTTTTAAAGGTGATGGACGACGTAGGGGTGAAGGTTGCACTCGAAGCTCCAAGTCTTTTGTTCAAGTTATCATTGGAGTATCCGTGGGGTTCACAGTCTTAGTAATTGGGAGTACATGGCTATACTTAGGCTACAGAAAATGGAAGCTCATCAAACTAAAAGAGAAGTTCTTCGAGGAACATGGAGGCTTAATGCTTCAACGACATCTCTCTCAATGGAAATCATCCACAGACATGGTCACAATCTTCACCCAAGAGGAGCTAGACAAGGCTACAAACAAGTACGATGAAAGCGCCGTGATTGGAAAAGGCGGCTACGGCACAGTCTACAAAGGCATCTTACCTGACGGCTCAGTAGTAGCAATCAAAAAATCAAAATTAGTGGACCAATCCCAAACTTCCCAATTCATCAACGAAGTTATCGTCCTATCCCAAATCAACCACCGTAACGTGGTCAGGCTCGTGGGGTGCTGTTTAGAGACCCAAGTTCCATTGTTGGTGTACGAGTTCATAACCAATGGCACCCTCTTCGATCACATCCATGATACTACAAAACACGTCCCACTTTCTTGGAAAGCTCGCTTGAGAATCGCTTCGGAAACTGCCGGAGTCATTTCGTATTTGCATTCTTCAGCTTCTATTCCCATCATCCATAGAGATATCAAGACGACCAACATACTTTTAGATGATAATTACAATGCAAAGGTGTCTGATTTTGGTGCTTCCAAGTTGGTTCCATTGGATCAAACTCAATTATCCACTATGGTTCAAGGGACTTTTGGATATTTGGACCCGGAGTATTTGTTAACGAGTGAGTTGACGGAGAAGAGCGATGTGTATAGCTTTGGAATTGTGCTTCTAGAGCTGATAACCGGGAAGAAGGCAGGGAATTTCGAGGGGCCGGAAGCGGAGAGAAATTTAGCTGTGTATGTTTTACGTGCAATGAAGGAAGATCGGTTGGGGGATGTTGTGGAGAAGGGAATGGCGAGGGAAAGGGAATTTGAGCAGATAAAAGAAGTGGGGAAGGTGGCGAGGAAGTGCTTGAGAATAAGTGGGGAGGAGAGGCCGAGCATGAAGGAGGTGGGCATGGAGTTGGAGGGTTTGAGAGTGATGGTTGAACATGAGTGGGTTGATGAAGAAAAATTGGTGGCGGATGGAGCTTTGGATTCGACGTCGAATCAGTTTGTGGTGAGTGGGAGTATAAATGTTGAGGATGATAGCATAAAAGTTCAGGTTTTGCCACTGATTCATCATGGAAGATGA 2238 45.35 MGRQIETLIRLMTTNILILSPLVYAATAVAAFQALPGCDDRCGDLQIPYPFGTREGCYLNKNFLITCNTTHDDRPTPFLRTGNIQVTNISISGELHISNVVAKDCYPKSNSLKARPSSATLNLLEFTVSSTKNKFTVIGCDTYAYLSGLIEGQTYTTGCMALCDNITTVRDGACSGNGCCQLDIPSGLKGLRCRVQSFKNHSKVLSYNPCGYAFVTEEDKFNFSGAYIRNFTQKRVPAVLDWGISNTTCLTANNESNCVCGPNSMKVTSLPDGSEYRCGCLEGFEGNPYLPQGCQDIDECRDERLNDCKFECVNTEGNYTCNCPEGFKGDGRRRGEGCTRSSKSFVQVIIGVSVGFTVLVIGSTWLYLGYRKWKLIKLKEKFFEEHGGLMLQRHLSQWKSSTDMVTIFTQEELDKATNKYDESAVIGKGGYGTVYKGILPDGSVVAIKKSKLVDQSQTSQFINEVIVLSQINHRNVVRLVGCCLETQVPLLVYEFITNGTLFDHIHDTTKHVPLSWKARLRIASETAGVISYLHSSASIPIIHRDIKTTNILLDDNYNAKVSDFGASKLVPLDQTQLSTMVQGTFGYLDPEYLLTSELTEKSDVYSFGIVLLELITGKKAGNFEGPEAERNLAVYVLRAMKEDRLGDVVEKGMAREREFEQIKEVGKVARKCLRISGEERPSMKEVGMELEGLRVMVEHEWVDEEKLVADGALDSTSNQFVVSGSINVEDDSIKVQVLPLIHHGR 745
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18552116 18555353 + CmoCh04G025200.1 Cmo04g02520 381495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02520 745 SUPERFAMILY EGF/Laminin 295 332 - -
Cmo04g02520 745 ProSitePatterns Serine/Threonine protein kinases active-site signature. 541 553 IPR008271 GO:0004672|GO:0006468
Cmo04g02520 745 ProSitePatterns Calcium-binding EGF-like domain signature. 296 321 IPR018097 GO:0005509
Cmo04g02520 745 ProSiteProfiles Protein kinase domain profile. 420 702 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g02520 745 Gene3D Transferase(Phosphotransferase) domain 1 496 712 - -
Cmo04g02520 745 CDD EGF_CA 296 330 - -
Cmo04g02520 745 Pfam Protein kinase domain 420 686 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g02520 745 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 312 323 IPR000152 -
Cmo04g02520 745 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 21 713 IPR045274 GO:0007166
Cmo04g02520 745 SMART egf_5 299 339 IPR000742 -
Cmo04g02520 745 SMART egf_5 248 295 IPR000742 -
Cmo04g02520 745 ProSiteProfiles EGF-like domain profile. 296 330 IPR000742 -
Cmo04g02520 745 CDD STKc_IRAK 426 693 - -
Cmo04g02520 745 Pfam Calcium-binding EGF domain 296 329 IPR001881 GO:0005509
Cmo04g02520 745 SMART egfca_6 296 339 IPR001881 GO:0005509
Cmo04g02520 745 ProSitePatterns Protein kinases ATP-binding region signature. 426 449 IPR017441 GO:0005524
Cmo04g02520 745 SMART serkin_6 420 702 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g02520 745 Gene3D Plasmodium vivax P25 domain 239 345 - -
Cmo04g02520 745 Gene3D Phosphorylase Kinase; domain 1 387 495 - -
Cmo04g02520 745 Pfam Wall-associated receptor kinase galacturonan-binding 38 93 IPR025287 GO:0030247
Cmo04g02520 745 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 21 713 - -
Cmo04g02520 745 SUPERFAMILY Protein kinase-like (PK-like) 398 690 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02520 Cmo-Chr4:18552116 Cmo15g00654 Cmo-Chr15:3163820 0 dispersed
Cmo04g02519 Cmo-Chr4:18545050 Cmo04g02520 Cmo-Chr4:18552116 0 tandem
Cmo04g02520 Cmo-Chr4:18552116 Cmo04g02521 Cmo-Chr4:18557946 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74310 PF00069 Pkinase 1.20E-46 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02520 - - cmos:111461403 1424.07