Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo04g02521 | ATGGAGCGTCAAATCGAGACGCTTATTCGACTCATGATCGTAAACATACTCATCCTATCGTCACCAGTTTACGCATCTCAAGCCTTACTCGGCTGCCCCGATCGGTGTGGCGACTTGCAGATACCATATCCATTCGGAACAAGGGAAGGGTGTTACCTAAACAAAAATTTCTTGATTACCTGTAACACAACTCATTTCAATCCCCCGAGGCCATTTCTCCGGACCGGCAACATTCAAGTTACGAATATATCCATCTCCGGTGAGCTCCAAATCTTGCACTTTGGGGCCAAAGATTGCTACCCCAAAAACAATAGCCTCGACGCACGTCGGACCTCCGCCACTCTCAACTTATCCACGTTCACAGTTTCCAGTACCAAAAACAAGTTCACTGTTATCGGCTGTGATACATACGCTTTTCTTTCTGGCCAAATCGAGGGGCAAAGCTATAGAACAGCATGCGTGGCGTTGTGTGATAACATCACCACCGTAAGAGATGGCGCCTGCTCTGGTAATGGGTGCTGTCAGCTTGACATCCCTAGCGGCTTAAAGGGTTTGAGGTATAGGGTGCGCAGCTTCGACAATCACACCGACGTCTTGAGCTTTAATCCATGTGGGTATGCCTTTGTGACCGAGGAAGACAAGTTTCATTTCTCGGCGGCTTATATTCGTGATTTCCCACAAAGGCAAGTTCCTGTTGTGCTTGATTGGGGTATTAGTAATACCACTTGCTCCACGGCTAACAACAAAAGTAATTGTATTTGTGGGCCCAATAGCATGATGGTTAACCCTCTCCATGATGGATCTGAGTATCGTTGCCGGTGCTTGGATGGGTTTGAGGGTAATCCTTATCTTCCTCGAGGATGTCAAGGTAAAGTGTTTGGGATTGTTAGAATTGTTGGAAGTGATAATTTGGGTGTTGATTTGAATTTTGTTGTTGTTTCAGATATTGATGAATGTAGGGATGAAAGGCTGAATGATTGCAAGTTTGAGTGTGTTAACACTAAAGGGAACTATACTTGTAATTGTCCGGAGGGTTTTAAAGGTGATGGACGACGTGGGGGTGAAGGTTGCACTCGAAGCTCCAAGTCTTTTGTTCAAGTTATCATTGGAGTATCCGTGGGGTTTACAGTCTTAGTAATTGGGAGTACATGGCTATACTTAGGCTACAGAAAGTGGAAGCTCATCAAACTAAAAGAGAAGTTCTTCGAGGAAAATGGAGGCTTAATGCTTCAACGACATCTCTCTCAATGGAAATCATCCACAGACACAGTCACAATCTTCACCCAAGAGGAGCTAGACAAGGCCACAAACAAGTACGATGAAAGCGCCGTGATTGGAAAAGGCGGCTACGGCACAGTCTACAAAGGCTTCTTACCCGACGGCTCAGTAGTAGCAATCAAAAAATCAAAATTAGTGGACCAATCCCAAACATCCCAATTCATCAATGAAGTCATTGTTCTTTCCCAAATCAACCATCGAAACGTGGTCAAGCTCTTAGGGTGTTGTTTGGAGACCCAAGTCCCATTGTTGGTCTACGAGTTCGTCACCAACGGCACCCTCTTCGACCACATCCATGACACTACCAAACACGTCCCACTTTCTTGGGAAGCTCGCTTGAGAATCGCTTCGGAAACTGCCGGGGTCATTTCGTATTTGCATTCATCAGCTTCCACTCCAATCATCCATAGAGATATCAAGACGACCAACATACTTTTAGACGATAATTACAATGCAAAGGTGTCTGATTTCGGTGCTTCCAAATTGGTTCCATTGGATCAAACTCAATTATCCACTATGGTTCAAGGGACTCTTGGATATTTGGACCCGGAGTATTTGTTAACGAGTGAGTTGACGGAGAAGAGCGATGTGTATAGCTTTGGAATTGTGCTTCTAGAGCTGATAACCGGGAAGAAGGCGGTGAGTTTCGAGGGGCCGGAAGCGGAGAGGAATTTAGCTATGTATGTTCTATGTGCAATGAAGGAAGATCGGTTGGGGGATGTTGTGGAGAAGGGAATAATGGCGAGGGAAAGGGAGTTTGAGCAGATAAAAGAAGTGGGGAAGGTGGCGAGGAAGTGCTTGAGAATAAGTGGGGAGGAGCGGCCGAGCATGAAGGAGGTGGCTATGGAGTTGGAGGGTTTGAGAGTGATGGTTGAACATCAATGGGTTAATGAAGAAAATATGGTGGCAGATGGAGCTTCGCATATGTTTGTGGTGAGTGGGAGTACAAATGTTGTGGATGATAGCATGAAAGTTCAGGTTTTGCCACTGATTCATGATGGAAGATGA | 2286 | 45.54 | MERQIETLIRLMIVNILILSSPVYASQALLGCPDRCGDLQIPYPFGTREGCYLNKNFLITCNTTHFNPPRPFLRTGNIQVTNISISGELQILHFGAKDCYPKNNSLDARRTSATLNLSTFTVSSTKNKFTVIGCDTYAFLSGQIEGQSYRTACVALCDNITTVRDGACSGNGCCQLDIPSGLKGLRYRVRSFDNHTDVLSFNPCGYAFVTEEDKFHFSAAYIRDFPQRQVPVVLDWGISNTTCSTANNKSNCICGPNSMMVNPLHDGSEYRCRCLDGFEGNPYLPRGCQGKVFGIVRIVGSDNLGVDLNFVVVSDIDECRDERLNDCKFECVNTKGNYTCNCPEGFKGDGRRGGEGCTRSSKSFVQVIIGVSVGFTVLVIGSTWLYLGYRKWKLIKLKEKFFEENGGLMLQRHLSQWKSSTDTVTIFTQEELDKATNKYDESAVIGKGGYGTVYKGFLPDGSVVAIKKSKLVDQSQTSQFINEVIVLSQINHRNVVKLLGCCLETQVPLLVYEFVTNGTLFDHIHDTTKHVPLSWEARLRIASETAGVISYLHSSASTPIIHRDIKTTNILLDDNYNAKVSDFGASKLVPLDQTQLSTMVQGTLGYLDPEYLLTSELTEKSDVYSFGIVLLELITGKKAVSFEGPEAERNLAMYVLCAMKEDRLGDVVEKGIMAREREFEQIKEVGKVARKCLRISGEERPSMKEVAMELEGLRVMVEHQWVNEENMVADGASHMFVVSGSTNVVDDSMKVQVLPLIHDGR | 761 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 18557946 | 18561390 | + | CmoCh04G025210.1 | Cmo04g02521 | 381496 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo04g02521 | 761 | SMART | serkin_6 | 439 | 722 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo04g02521 | 761 | Pfam | Calcium-binding EGF domain | 315 | 349 | IPR001881 | GO:0005509 | |
Cmo04g02521 | 761 | Gene3D | Laminin | 236 | 357 | - | - | |
Cmo04g02521 | 761 | Gene3D | Phosphorylase Kinase; domain 1 | 406 | 514 | - | - | |
Cmo04g02521 | 761 | SMART | egf_5 | 242 | 289 | IPR000742 | - | |
Cmo04g02521 | 761 | SMART | egf_5 | 318 | 358 | IPR000742 | - | |
Cmo04g02521 | 761 | CDD | EGF_CA | 315 | 349 | - | - | |
Cmo04g02521 | 761 | ProSiteProfiles | EGF-like domain profile. | 315 | 349 | IPR000742 | - | |
Cmo04g02521 | 761 | PANTHER | WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 | 313 | 734 | IPR045274 | GO:0007166 | |
Cmo04g02521 | 761 | PANTHER | WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 | 25 | 287 | IPR045274 | GO:0007166 | |
Cmo04g02521 | 761 | Pfam | Protein kinase domain | 439 | 706 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo04g02521 | 761 | ProSitePatterns | Aspartic acid and asparagine hydroxylation site. | 331 | 342 | IPR000152 | - | |
Cmo04g02521 | 761 | PANTHER | WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 | 313 | 734 | - | - | |
Cmo04g02521 | 761 | PANTHER | WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 | 25 | 287 | - | - | |
Cmo04g02521 | 761 | ProSitePatterns | Protein kinases ATP-binding region signature. | 445 | 468 | IPR017441 | GO:0005524 | |
Cmo04g02521 | 761 | ProSiteProfiles | Protein kinase domain profile. | 439 | 722 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo04g02521 | 761 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 560 | 572 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo04g02521 | 761 | ProSitePatterns | Calcium-binding EGF-like domain signature. | 315 | 340 | IPR018097 | GO:0005509 | |
Cmo04g02521 | 761 | Pfam | Wall-associated receptor kinase galacturonan-binding | 32 | 87 | IPR025287 | GO:0030247 | |
Cmo04g02521 | 761 | CDD | STKc_IRAK | 445 | 713 | - | - | |
Cmo04g02521 | 761 | SMART | egfca_6 | 315 | 358 | IPR001881 | GO:0005509 | |
Cmo04g02521 | 761 | Gene3D | Transferase(Phosphotransferase) domain 1 | 515 | 734 | - | - | |
Cmo04g02521 | 761 | ProSiteProfiles | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 32 | - | - | |
Cmo04g02521 | 761 | SUPERFAMILY | EGF/Laminin | 315 | 350 | - | - | |
Cmo04g02521 | 761 | SUPERFAMILY | Protein kinase-like (PK-like) | 417 | 711 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g01069 | Cmo-Chr1:8592936 | Cmo04g02521 | Cmo-Chr4:18557946 | 8.68E-166 | dispersed | |
Cmo04g02521 | Cmo-Chr4:18557946 | Cmo15g00654 | Cmo-Chr15:3163820 | 0 | dispersed | |
Cmo15g00115 | Cmo-Chr15:551544 | Cmo04g02521 | Cmo-Chr4:18557946 | 1.17E-91 | dispersed | |
Cmo04g02520 | Cmo-Chr4:18552116 | Cmo04g02521 | Cmo-Chr4:18557946 | 0 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74311 | PF00069 | Pkinase | 1.30E-47 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo04g02521 | - | - | cmos:111461403 | 1464.13 |