Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02521 ATGGAGCGTCAAATCGAGACGCTTATTCGACTCATGATCGTAAACATACTCATCCTATCGTCACCAGTTTACGCATCTCAAGCCTTACTCGGCTGCCCCGATCGGTGTGGCGACTTGCAGATACCATATCCATTCGGAACAAGGGAAGGGTGTTACCTAAACAAAAATTTCTTGATTACCTGTAACACAACTCATTTCAATCCCCCGAGGCCATTTCTCCGGACCGGCAACATTCAAGTTACGAATATATCCATCTCCGGTGAGCTCCAAATCTTGCACTTTGGGGCCAAAGATTGCTACCCCAAAAACAATAGCCTCGACGCACGTCGGACCTCCGCCACTCTCAACTTATCCACGTTCACAGTTTCCAGTACCAAAAACAAGTTCACTGTTATCGGCTGTGATACATACGCTTTTCTTTCTGGCCAAATCGAGGGGCAAAGCTATAGAACAGCATGCGTGGCGTTGTGTGATAACATCACCACCGTAAGAGATGGCGCCTGCTCTGGTAATGGGTGCTGTCAGCTTGACATCCCTAGCGGCTTAAAGGGTTTGAGGTATAGGGTGCGCAGCTTCGACAATCACACCGACGTCTTGAGCTTTAATCCATGTGGGTATGCCTTTGTGACCGAGGAAGACAAGTTTCATTTCTCGGCGGCTTATATTCGTGATTTCCCACAAAGGCAAGTTCCTGTTGTGCTTGATTGGGGTATTAGTAATACCACTTGCTCCACGGCTAACAACAAAAGTAATTGTATTTGTGGGCCCAATAGCATGATGGTTAACCCTCTCCATGATGGATCTGAGTATCGTTGCCGGTGCTTGGATGGGTTTGAGGGTAATCCTTATCTTCCTCGAGGATGTCAAGGTAAAGTGTTTGGGATTGTTAGAATTGTTGGAAGTGATAATTTGGGTGTTGATTTGAATTTTGTTGTTGTTTCAGATATTGATGAATGTAGGGATGAAAGGCTGAATGATTGCAAGTTTGAGTGTGTTAACACTAAAGGGAACTATACTTGTAATTGTCCGGAGGGTTTTAAAGGTGATGGACGACGTGGGGGTGAAGGTTGCACTCGAAGCTCCAAGTCTTTTGTTCAAGTTATCATTGGAGTATCCGTGGGGTTTACAGTCTTAGTAATTGGGAGTACATGGCTATACTTAGGCTACAGAAAGTGGAAGCTCATCAAACTAAAAGAGAAGTTCTTCGAGGAAAATGGAGGCTTAATGCTTCAACGACATCTCTCTCAATGGAAATCATCCACAGACACAGTCACAATCTTCACCCAAGAGGAGCTAGACAAGGCCACAAACAAGTACGATGAAAGCGCCGTGATTGGAAAAGGCGGCTACGGCACAGTCTACAAAGGCTTCTTACCCGACGGCTCAGTAGTAGCAATCAAAAAATCAAAATTAGTGGACCAATCCCAAACATCCCAATTCATCAATGAAGTCATTGTTCTTTCCCAAATCAACCATCGAAACGTGGTCAAGCTCTTAGGGTGTTGTTTGGAGACCCAAGTCCCATTGTTGGTCTACGAGTTCGTCACCAACGGCACCCTCTTCGACCACATCCATGACACTACCAAACACGTCCCACTTTCTTGGGAAGCTCGCTTGAGAATCGCTTCGGAAACTGCCGGGGTCATTTCGTATTTGCATTCATCAGCTTCCACTCCAATCATCCATAGAGATATCAAGACGACCAACATACTTTTAGACGATAATTACAATGCAAAGGTGTCTGATTTCGGTGCTTCCAAATTGGTTCCATTGGATCAAACTCAATTATCCACTATGGTTCAAGGGACTCTTGGATATTTGGACCCGGAGTATTTGTTAACGAGTGAGTTGACGGAGAAGAGCGATGTGTATAGCTTTGGAATTGTGCTTCTAGAGCTGATAACCGGGAAGAAGGCGGTGAGTTTCGAGGGGCCGGAAGCGGAGAGGAATTTAGCTATGTATGTTCTATGTGCAATGAAGGAAGATCGGTTGGGGGATGTTGTGGAGAAGGGAATAATGGCGAGGGAAAGGGAGTTTGAGCAGATAAAAGAAGTGGGGAAGGTGGCGAGGAAGTGCTTGAGAATAAGTGGGGAGGAGCGGCCGAGCATGAAGGAGGTGGCTATGGAGTTGGAGGGTTTGAGAGTGATGGTTGAACATCAATGGGTTAATGAAGAAAATATGGTGGCAGATGGAGCTTCGCATATGTTTGTGGTGAGTGGGAGTACAAATGTTGTGGATGATAGCATGAAAGTTCAGGTTTTGCCACTGATTCATGATGGAAGATGA 2286 45.54 MERQIETLIRLMIVNILILSSPVYASQALLGCPDRCGDLQIPYPFGTREGCYLNKNFLITCNTTHFNPPRPFLRTGNIQVTNISISGELQILHFGAKDCYPKNNSLDARRTSATLNLSTFTVSSTKNKFTVIGCDTYAFLSGQIEGQSYRTACVALCDNITTVRDGACSGNGCCQLDIPSGLKGLRYRVRSFDNHTDVLSFNPCGYAFVTEEDKFHFSAAYIRDFPQRQVPVVLDWGISNTTCSTANNKSNCICGPNSMMVNPLHDGSEYRCRCLDGFEGNPYLPRGCQGKVFGIVRIVGSDNLGVDLNFVVVSDIDECRDERLNDCKFECVNTKGNYTCNCPEGFKGDGRRGGEGCTRSSKSFVQVIIGVSVGFTVLVIGSTWLYLGYRKWKLIKLKEKFFEENGGLMLQRHLSQWKSSTDTVTIFTQEELDKATNKYDESAVIGKGGYGTVYKGFLPDGSVVAIKKSKLVDQSQTSQFINEVIVLSQINHRNVVKLLGCCLETQVPLLVYEFVTNGTLFDHIHDTTKHVPLSWEARLRIASETAGVISYLHSSASTPIIHRDIKTTNILLDDNYNAKVSDFGASKLVPLDQTQLSTMVQGTLGYLDPEYLLTSELTEKSDVYSFGIVLLELITGKKAVSFEGPEAERNLAMYVLCAMKEDRLGDVVEKGIMAREREFEQIKEVGKVARKCLRISGEERPSMKEVAMELEGLRVMVEHQWVNEENMVADGASHMFVVSGSTNVVDDSMKVQVLPLIHDGR 761
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 18557946 18561390 + CmoCh04G025210.1 Cmo04g02521 381496
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02521 761 SMART serkin_6 439 722 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g02521 761 Pfam Calcium-binding EGF domain 315 349 IPR001881 GO:0005509
Cmo04g02521 761 Gene3D Laminin 236 357 - -
Cmo04g02521 761 Gene3D Phosphorylase Kinase; domain 1 406 514 - -
Cmo04g02521 761 SMART egf_5 242 289 IPR000742 -
Cmo04g02521 761 SMART egf_5 318 358 IPR000742 -
Cmo04g02521 761 CDD EGF_CA 315 349 - -
Cmo04g02521 761 ProSiteProfiles EGF-like domain profile. 315 349 IPR000742 -
Cmo04g02521 761 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 313 734 IPR045274 GO:0007166
Cmo04g02521 761 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 25 287 IPR045274 GO:0007166
Cmo04g02521 761 Pfam Protein kinase domain 439 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g02521 761 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 331 342 IPR000152 -
Cmo04g02521 761 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 313 734 - -
Cmo04g02521 761 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 25 287 - -
Cmo04g02521 761 ProSitePatterns Protein kinases ATP-binding region signature. 445 468 IPR017441 GO:0005524
Cmo04g02521 761 ProSiteProfiles Protein kinase domain profile. 439 722 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g02521 761 ProSitePatterns Serine/Threonine protein kinases active-site signature. 560 572 IPR008271 GO:0004672|GO:0006468
Cmo04g02521 761 ProSitePatterns Calcium-binding EGF-like domain signature. 315 340 IPR018097 GO:0005509
Cmo04g02521 761 Pfam Wall-associated receptor kinase galacturonan-binding 32 87 IPR025287 GO:0030247
Cmo04g02521 761 CDD STKc_IRAK 445 713 - -
Cmo04g02521 761 SMART egfca_6 315 358 IPR001881 GO:0005509
Cmo04g02521 761 Gene3D Transferase(Phosphotransferase) domain 1 515 734 - -
Cmo04g02521 761 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 32 - -
Cmo04g02521 761 SUPERFAMILY EGF/Laminin 315 350 - -
Cmo04g02521 761 SUPERFAMILY Protein kinase-like (PK-like) 417 711 IPR011009 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01069 Cmo-Chr1:8592936 Cmo04g02521 Cmo-Chr4:18557946 8.68E-166 dispersed
Cmo04g02521 Cmo-Chr4:18557946 Cmo15g00654 Cmo-Chr15:3163820 0 dispersed
Cmo15g00115 Cmo-Chr15:551544 Cmo04g02521 Cmo-Chr4:18557946 1.17E-91 dispersed
Cmo04g02520 Cmo-Chr4:18552116 Cmo04g02521 Cmo-Chr4:18557946 0 tandem
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74311 PF00069 Pkinase 1.30E-47 CL0016 Cmo PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02521 - - cmos:111461403 1464.13