Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02524 ATGCACTTCCTGCTAAAGAATCTTCGTGGTGCGCACAGAGCTTCGTTTTCTCATTACTCCTATCTGATTGACCAGTGTTTAGCGTCTAGATCTGTTCATATTGCGAAAACAATCCACGCTCAATTGCTAAAGCTTGGCCTCAACAACAATACTTTTCTGGGTAATCGCTGTCTTCAGCTATACGTGTTATTTGGTCCCGTCCATGATTTTTTTAGAGTATTTGGTGATATCAAAGAGAAGAATATTGTATCTTGGAACATATGCTTGAAGGGGTTGTTTAGATTTGGTTATGTCAATGGTGCACGCAATCTGTTCGATGAAATGCCTGAGAGGGACATTGTTTCTTGGAATTGCATGATGTCTGGCTGCGTTTCTTCTGGGTTTGCTAATAAGGCTATGGATGTGTTTCTGGAGATGCAAGATGCTGGTTTTAGACCAAGTGAATATACGTTTTCAATTTTGCTTTCGGTTATGTCGTGTCCTAGTCATGGCAAGCAAATTCATGGCAGTATGATTCGAAGTGGTGTTGATGTGTCAAATGTGGTTCTTGGGAATTCATTGATTGATATGTATGGAAAATTTGGCCTTGTTGATTATATGTTTGTCATGTTTTATAGTATGGAAAAGGTGGATGTTATCTCTTGGAACTCTTTGATTTTGGGCTGCCACAGATCAGGCTTTAGCGTATTGGCACTAAATCAGTTCTTTCTTATGAGAGCCACTGGGCACTCTCCTGATCAGTTCACTGTATCAATAATGATAAGTTTATGTTCTTTCCTCCAAGAATTGGAACTGGGTAAGCAATTTCTTGCTTTCTGTTTCAAGATGGGATTTACTTCTAACAGCATTATACTTAGTGCTGCTATTGACTTGTTTTCCAAATGCAACAGCTTGAGGGATGCAATGCAGCTTTTTGAAGAAGCCAATCAATGGGATCAAGCTCTTTGTGATGCCATGATCTCAAGCTTGGCATGGCATGGTCATTGGAGGGATTCCATGTGGCTTTTTGTGTATGCCTTAAGGGAGAACCTCAGGCCAACAGGGATTACACTCAGCAGTGTCCTGAGCTCCATTTCAGTCTTCACACCTCTGGACTTAGGTAGTCAAATTCATAATTTGGTTCTTAAGTTGGGTTTTGAGTCTGATACCGTCGTCACTAGTTCGCTCGTCGAAATGTATGCTAAAGTTGGGTTAATTGATAACGCCATGAAAGTCTTCACGGATATGCCTTCGAGAGATTTAATATCTTGGAACACTATGATTATGGGTCTGGTTAACAATGGTAAATACTTTGAGGCCTTAGGCACACTTGAAAATTTGGTTAGGGAAGGTGTAGTGGCAGATAGGATAACACTAGCTGGAGTCTTATTAGCTTGCAGCCATGCTGGTTTTGTTGATGAGGGGCTAAACATCTTCTCTACAATGGAAAACAAACACGGGGTCGTACCGACGAATGAGCATTATACTTGTGTGGTGGACTTACTGAGTCGGGCTGGTAAATTCAAAGAAGCAGTTAATATCATCGAAACAACATCGTGCCAACCTACTTCTACGTTTTGGATATCACTACTAGATGCCTGTGCTATTCATGGAGACATGAACACCATTGAAAGAGTTGCGGAGAGGGTGATGAAGCTGGAACCTCAATCATCCTTACCGTATTCGGTGCTGGCTCGAGTATATGCAGCGAGAGGCCGATGGGAAAGCACTGTTCGTGTCAGTAAGGCCATGGAGAATATAGCTGCACAGAAGGTGAAGGCTTGCAGCTGGGTTGTGATCAAAGATCATGTGTATGCTTTCCAGGATGACCGGTTGCAGCATCTGGGGGGAGAAAGTTTCATTTCTGCGTTGGAGCTGATTGTTTGGGAGGTGGAATATGGGAATGAACACGAACAGTATGTTTAA 1905 42.15 MHFLLKNLRGAHRASFSHYSYLIDQCLASRSVHIAKTIHAQLLKLGLNNNTFLGNRCLQLYVLFGPVHDFFRVFGDIKEKNIVSWNICLKGLFRFGYVNGARNLFDEMPERDIVSWNCMMSGCVSSGFANKAMDVFLEMQDAGFRPSEYTFSILLSVMSCPSHGKQIHGSMIRSGVDVSNVVLGNSLIDMYGKFGLVDYMFVMFYSMEKVDVISWNSLILGCHRSGFSVLALNQFFLMRATGHSPDQFTVSIMISLCSFLQELELGKQFLAFCFKMGFTSNSIILSAAIDLFSKCNSLRDAMQLFEEANQWDQALCDAMISSLAWHGHWRDSMWLFVYALRENLRPTGITLSSVLSSISVFTPLDLGSQIHNLVLKLGFESDTVVTSSLVEMYAKVGLIDNAMKVFTDMPSRDLISWNTMIMGLVNNGKYFEALGTLENLVREGVVADRITLAGVLLACSHAGFVDEGLNIFSTMENKHGVVPTNEHYTCVVDLLSRAGKFKEAVNIIETTSCQPTSTFWISLLDACAIHGDMNTIERVAERVMKLEPQSSLPYSVLARVYAARGRWESTVRVSKAMENIAAQKVKACSWVVIKDHVYAFQDDRLQHLGGESFISALELIVWEVEYGNEHEQYV 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18574582 18576486 + CmoCh04G025240.1 Cmo04g02524 381499

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02524 634 Pfam PPR repeat 213 240 IPR002885 -
Cmo04g02524 634 Pfam PPR repeat 387 413 IPR002885 -
Cmo04g02524 634 Pfam PPR repeat 487 508 IPR002885 -
Cmo04g02524 634 Pfam PPR repeat 415 445 IPR002885 -
Cmo04g02524 634 Pfam PPR repeat 185 209 IPR002885 -
Cmo04g02524 634 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 112 146 IPR002885 -
Cmo04g02524 634 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 413 447 IPR002885 -
Cmo04g02524 634 Gene3D Tetratricopeptide repeat domain 13 159 IPR011990 GO:0005515
Cmo04g02524 634 PANTHER OS03G0435200 PROTEIN 4 627 - -
Cmo04g02524 634 TIGRFAM PPR: pentatricopeptide repeat domain 415 448 IPR002885 -
Cmo04g02524 634 TIGRFAM PPR: pentatricopeptide repeat domain 83 114 IPR002885 -
Cmo04g02524 634 TIGRFAM PPR: pentatricopeptide repeat domain 114 148 IPR002885 -
Cmo04g02524 634 Pfam PPR repeat family 112 156 IPR002885 -
Cmo04g02524 634 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 81 111 IPR002885 -
Cmo04g02524 634 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 245 IPR002885 -
Cmo04g02524 634 Gene3D Tetratricopeptide repeat domain 364 467 IPR011990 GO:0005515
Cmo04g02524 634 Gene3D Tetratricopeptide repeat domain 160 264 IPR011990 GO:0005515
Cmo04g02524 634 Gene3D Tetratricopeptide repeat domain 265 361 IPR011990 GO:0005515
Cmo04g02524 634 PANTHER OS07G0578800 PROTEIN-RELATED 4 627 IPR045215 GO:0003723|GO:0009451
Cmo04g02524 634 Gene3D Tetratricopeptide repeat domain 468 584 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02524 - - - csv:101210612 976.852
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02524 Cmo-Chr4:18574582 Cmo16g01347 Cmo-Chr16:9495273 7.41E-24 dispersed
Cmo15g00647 Cmo-Chr15:3139226 Cmo04g02524 Cmo-Chr4:18574582 4.69E-45 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1173 . . . . . . . . Cmo04g02524 . . . . . . . . Bhi04g01837 . . . Hepe02g2102 . Lcy10g1297 . . . . . . . . . . Cone20ag0413 . . . . . . . . . . Bma01g00880 . . . . . . Car04g02324 . . . . . . . . . . . . . . . . . Lsi08g00508 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011857 1 2 0 0 1 1 1 1 1 1 1 1 1 0 1 1 2 0 1 1 1 1 1 1 1 1 2 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g02524 Cmo_Chr04 FPKM 1.584869 1.537788 4.627379 4.865754 9.173644 10.204447 11.147413 13.178454 11.695005 12.928996