Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02526 ATGGAGATCTCTCCTACTTCGTCTCGTATTATCATTGCTTATGATGCTACCAAGGATCGCACTGAACATGAGCTTCAGATGACGCTTAGGAACTTGTGGATGCGAGGCGACATTCTTCGCGGAGGCGATACGCTCATTGTGCTTGGAATCCTTCATAGAGTGCCTCATCCGATGGGATACCAATTGATAGCCTGCTCTGAATCGTTCGCTGGAACCAGCCTTCGAGCAATGGAGGATGAGGTTTCCAAGAAAGCTGATGCGTACATCGCCATGCTTCAGCAAAGTGCAGACATGTGTGAAGAAGGAGGGGTCAGTATTGAAGTTAGAATTACAGCTGGTTTCCCCATTAAGAATGTTATTCTCCAAGAAATTATGGTCTTCAGCGCGAGCTGGGTTATACTTGACAGGCATCTTCGACGGGATGAGAGCTTTTACCTTAGACATTTATCTTGCAAGGTTGCTGTAATCCAAGATAACTTGTCTGTGAGAGTTTTGAGAAATAAGGCTACAACTGGGGCAGATAAATTAGAACATAAATTACGGGATAGTGAGCAGACTGTTATCTCCATCAAAAGCTTCTCATTCCAAAGTAGTTCTCTGGATAGCTCATCTGCACAGAGCAACTGGACCAGTTCATCTAGTAGCATGTCTAGGGAGCATGCATCGGATCCTGAGTCATCTTCTCGGCAAGAAAAAATAGGTACAGATTCCAGAGAACAGAATATTTATGCAACTGCTTCTCAGATTGTTATACTTCCAACTAAGGACGTCTTTCAACAGAAATCTTTAGAAGCACCAATTCTATGTTCTGTTTGTGGAACGAGGTCGGAGTTATATTTGAAGGATACAATGAGATTTAGTTATTCTGACATACAGCTAGCAACTGCCGATTTCTCAGCAGGAAACTTGTTAGGAGAGGGTGGTTATGGTCATGTTTTTAAGGGTGAACTAAAAAATGGACAACTCATTGCTGCAAAAGTGCGAAAAGAAGAAAGTACACAAGGATTTGTAGAGTTTCATTCTGAGATACAAGTTTTGAGTTTTGCTCGTCACAAGAACATAGTGATGCTGTTGGGGTTTAGTTGCAAGGAAAACATAAACGTTCTGGTGTACGAATATATTTGCAACAGGTCTCTTGATTTTCACTTATTTGGTAAGAAAACAACTGTTCTTGAACTACATCAAAGATATGGCATTGCCGTTGGGATTGCCAAGGGACTGCGTTTTCTGCATGAAGAATGTCGTGGAGGTCCTGTAATACATAGAGATGTCCGTCCGAGCAACATATTGCTCACACATGATTATGTTCCTATGTTAGGTGATTTTGGTTTGGCCAAATGGAAGACAAAAGATGATACTTCGCATTCAAGCATACTCGGCACATTTGGATATGTTGCACCGGAATATGCAGAAAATGGTATTCTTTCAGTAAGAACGGATGTATATGCATTTGGAATTGTGTTGCTACAATTAATATCTGGACGCAAGGTGTTCGACGCGATGGATGATATACAAGGACGATCTCTGCGAGAGTGGGCTGAACCATTAATTGAAAACTTAGCATTACATGAACTGATTGATTCTCGAGTTGCAAATACATATGACACGTATGAATTATACCTCATGGCCCGAACTGCATACTTATGCGTGCGGATAAACCCCGAGAATCGTCCATCAATGGGAGAGGTTGTGCGCCTTCTTGAAGGAGAAAATGATCATTTTCACTATCTGGGGGAGAAGCTAATACCTCGTTATAACAGATAA 1764 41.72 MEISPTSSRIIIAYDATKDRTEHELQMTLRNLWMRGDILRGGDTLIVLGILHRVPHPMGYQLIACSESFAGTSLRAMEDEVSKKADAYIAMLQQSADMCEEGGVSIEVRITAGFPIKNVILQEIMVFSASWVILDRHLRRDESFYLRHLSCKVAVIQDNLSVRVLRNKATTGADKLEHKLRDSEQTVISIKSFSFQSSSLDSSSAQSNWTSSSSSMSREHASDPESSSRQEKIGTDSREQNIYATASQIVILPTKDVFQQKSLEAPILCSVCGTRSELYLKDTMRFSYSDIQLATADFSAGNLLGEGGYGHVFKGELKNGQLIAAKVRKEESTQGFVEFHSEIQVLSFARHKNIVMLLGFSCKENINVLVYEYICNRSLDFHLFGKKTTVLELHQRYGIAVGIAKGLRFLHEECRGGPVIHRDVRPSNILLTHDYVPMLGDFGLAKWKTKDDTSHSSILGTFGYVAPEYAENGILSVRTDVYAFGIVLLQLISGRKVFDAMDDIQGRSLREWAEPLIENLALHELIDSRVANTYDTYELYLMARTAYLCVRINPENRPSMGEVVRLLEGENDHFHYLGEKLIPRYNR 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18577828 18583552 + CmoCh04G025260.1 Cmo04g02526 381501

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02526 587 ProSitePatterns Protein kinases ATP-binding region signature. 304 326 IPR017441 GO:0005524
Cmo04g02526 587 ProSitePatterns Tyrosine protein kinases specific active-site signature. 419 431 IPR008266 GO:0004672|GO:0006468
Cmo04g02526 587 PANTHER RECEPTOR-LIKE KINASE 8 579 - -
Cmo04g02526 587 MobiDBLite consensus disorder prediction 222 236 - -
Cmo04g02526 587 MobiDBLite consensus disorder prediction 199 221 - -
Cmo04g02526 587 Pfam Protein kinase domain 301 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g02526 587 Gene3D Phosphorylase Kinase; domain 1 271 373 - -
Cmo04g02526 587 SUPERFAMILY Protein kinase-like (PK-like) 282 569 IPR011009 -
Cmo04g02526 587 PANTHER OS01G0253100 PROTEIN 8 579 IPR045271 GO:0004714|GO:0006468
Cmo04g02526 587 Gene3D Transferase(Phosphotransferase) domain 1 375 577 - -
Cmo04g02526 587 MobiDBLite consensus disorder prediction 199 237 - -
Cmo04g02526 587 ProSiteProfiles Protein kinase domain profile. 298 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g02526 587 SMART tyrkin_6 298 567 IPR020635 GO:0004713|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02526 - - - mcha:111011855 983.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02526 Cmo-Chr4:18577828 Cmo14g01304 Cmo-Chr14:10897387 5.87E-106 dispersed
Cmo04g02526 Cmo-Chr4:18577828 Cmo01g00071 Cmo-Chr1:295611 2.62E-106 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1175 . . . . . . . . Cmo04g02526 . . . Car01g01585 . . . . . . . . . . . Cla08g00648 . . . . . . Cone4ag1445 Cone7ag1489 . . Lsi04g01809 . . Cme03g00434 . . . Bda01g01381 Bpe02g01594 . . . . . . . . . . Cpe01g02090 . . . . . . . . . . . . . . . . . Chy03g00565 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011525 0 0 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 2 27
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74312 PF00069 Pkinase 3.60E-38 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g02526 Cmo_Chr04 FPKM 5.722801 5.615767 12.503036 11.341501 40.89579 39.34943 40.984303 19.03532 19.716272 19.008244