Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02530 ATGGTGAACGATACTGAGTATTATGATGTTCTCGGTGTTCGTCCTTCTGCTTCCGAGGAGGAGATACGTAAGGCCTATTATCTCAAGGTCGGAGTTTTGGAAATAGGTAGACTGAGAATGAATTGGATAATTGGTTTGGAGTTTGAGTTAATTGTTCTTGCGAAACAAGTCCATCCGGATAAGAATTTGAATGATCCTCAAGCTGCTGATAGGTTTCAGGCAAGTGTACTAAACTGGTTTTTATCGTCTTCTTTACCTTCTGCTGTTTATGTTTTGCTTAATGTGGAGCTTTTTCCTAGCGGCCGGAATTTTGTATTGCGTTACTTTTTGTTATGTGAAATAGTGCTTGGTGAAGCTTATCAAGTTTTGAGTGATGCAGTCCAAAGAGAGGCATATGATAGGAATGGGAAGCACGGTATTACTAGGGAATCCATGCTTGACCCTACTGCTGTCTTTGCACTTCTATTTGGAAGTGAATTATTTGAGGACTACATCGGACATTTAGCGGTAGCATCAATGGCTTCATCTGAATTAGAGAGCGAAACTGGTAATCCAGAGAGACTACATGATAAGTTGAAGGCAAGTATGCCTAATGGTGCTGTCCAGAAAGAAAGAGAAGAAAAACTTGCACGTGTGCTTGAGGGTTTTCTTAATCAATATGTTCAAGGTGACAAAGATGGATTCTTACGGCATGCTGAATCTGAAGCCAAAAGACTTTCAAATGCGGCTTTTGGTGCTAGTATATTACACACTATAGGCTACATTTATTCAAGACAAGCAGCACAAGAGCTTGGGAAGAGAGCCATTTATCTTGGCGTGCCATTTGTGGCTGAATGGTTTCGCAACAAGGGACATTTTTGGAAGTCACAGATAACAGCTGCAAAAGGCAGGAAAATCTCAAGCTTACACTTCGTCCTCTGTTTCTCATCGATGATTGAGTATTCTGCTTTGATATTTTGCTACCTAATCAGATCATCAATTTATATGTATCCAGGTGCTTTCCAGTTGTTACAACTTCAAGATGATATTTCCCGGCAGTTTAAAATGGATGGTAGTGGCCCAGGAAATGATATTGAATCGCATATACGAGCGAATAAAGACACATTCCTGAATTCTTTGTGGAAGCTTAACGTAGTGGACATTGAACTGACTCTTGTAAATGTGTGCCAGATGGTGAGTTCTCTCTCTCTTGTTTTTTTAAGTGAATATTTGGGAACTTATCGAAGTATCCAGGGCAGCACAGATAATGATTTTTTTGTGGTCCAATTCGTTCCCCAGGTCCTACGGGATAATACTGTTAAAAAGGAAGAACTAAAAGCCCGTGCTCTGGCAATGAAGATTCTTGGAAAGATATTCCAGGTTCAATATGAGATTAAGCAGGAGAAGCATGCACAAAATGGTGGAACGTCAAGAAAGAAAAGTGCTGCTGCAGTAGATGACGATGGAACGAGTTCAGAGAGCAGCGATGATGAGGATCCCCAGAGACCACTATCATGTCGAACTCCTTTTCTTACTCAGGCAAGTAGATCAGCTCTTGTCTCCCTACTCAAAACCTAA 1557 40.85 MVNDTEYYDVLGVRPSASEEEIRKAYYLKVGVLEIGRLRMNWIIGLEFELIVLAKQVHPDKNLNDPQAADRFQASVLNWFLSSSLPSAVYVLLNVELFPSGRNFVLRYFLLCEIVLGEAYQVLSDAVQREAYDRNGKHGITRESMLDPTAVFALLFGSELFEDYIGHLAVASMASSELESETGNPERLHDKLKASMPNGAVQKEREEKLARVLEGFLNQYVQGDKDGFLRHAESEAKRLSNAAFGASILHTIGYIYSRQAAQELGKRAIYLGVPFVAEWFRNKGHFWKSQITAAKGRKISSLHFVLCFSSMIEYSALIFCYLIRSSIYMYPGAFQLLQLQDDISRQFKMDGSGPGNDIESHIRANKDTFLNSLWKLNVVDIELTLVNVCQMVSSLSLVFLSEYLGTYRSIQGSTDNDFFVVQFVPQVLRDNTVKKEELKARALAMKILGKIFQVQYEIKQEKHAQNGGTSRKKSAAAVDDDGTSSESSDDEDPQRPLSCRTPFLTQASRSALVSLLKT 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18591952 18595009 - CmoCh04G025300.1 Cmo04g02530 381505

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02530 518 Pfam X-domain of DnaJ-containing 202 392 IPR026894 -
Cmo04g02530 518 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 1 296 - -
Cmo04g02530 518 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 324 511 - -
Cmo04g02530 518 ProSiteProfiles dnaJ domain profile. 6 136 IPR001623 -
Cmo04g02530 518 MobiDBLite consensus disorder prediction 464 479 - -
Cmo04g02530 518 MobiDBLite consensus disorder prediction 463 503 - -
Cmo04g02530 518 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 1 296 - -
Cmo04g02530 518 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 324 511 - -
Cmo04g02530 518 SUPERFAMILY Chaperone J-domain 2 28 IPR036869 -
Cmo04g02530 518 CDD DnaJ 6 73 IPR001623 -
Cmo04g02530 518 Gene3D DnaJ domain 1 151 IPR036869 -
Cmo04g02530 518 PRINTS DnaJ domain signature 8 26 IPR001623 -
Cmo04g02530 518 PRINTS DnaJ domain signature 50 65 IPR001623 -
Cmo04g02530 518 PRINTS DnaJ domain signature 128 147 IPR001623 -
Cmo04g02530 518 SUPERFAMILY Chaperone J-domain 116 166 IPR036869 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02530 - - - csv:101219818 567.385
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g02530 Cmo15g00644 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00386 Cmo-Chr2:1980080 Cmo04g02530 Cmo-Chr4:18591952 3.73E-82 dispersed
Cmo04g02530 Cmo-Chr4:18591952 Cmo20g00840 Cmo-Chr20:4206891 1.44E-88 dispersed
Cmo15g00644 Cmo-Chr15:3127366 Cmo04g02530 Cmo-Chr4:18591952 4.05E-72 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1178 . Blo12g00834 . Bda03g00342 . Bpe04g00302 . . Cmo04g02530 Cmo15g00644 . . . . . . Cpe13g00655 Bhi04g01834 . . . . . . . . . . . . . . . Cone17ag0805 Cone20ag0410 . . . Cme03g00430 . Blo18g00226 . Bda01g01383 Bpe02g01596 . Bma01g00878 . . . . . . Car04g02328 Car15g00585 Cpe01g02091 . . . . . . . . . . . . . . . . . Chy03g00571 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002184 1 3 2 3 3 1 3 1 0 2 1 2 2 1 2 3 0 3 2 1 2 2 2 2 1 3 2 4 2 2 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g02530 Cmo_Chr04 FPKM 3.333333 3.467154 4.196501 3.853961 5.860251 6.097815 6.673842 0.246405 0.208821 0.0