Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02531 TTTCTCTTTCTTTGCTCTCGTCTAGCCGTAGGAGCATCCACCGCCGCCGTTACAAAGTCCAACTCTTCCACGGAGGAAGCTCTGTTTCCTCTACCCTCTCCCTCTTCTCCCCCGCTTGGGGATGCCGATCAAGAGACCACTCTACAACCGCCTGAGCCATCTTCCTCTCCACCGCCGCCGGTAGTTTCAGAAATTATAATGTTCTCGAGGGATTCTAACGTTCTATTCAGTGGCGGCGGTATCAGTTTTCTCCATGGAAACCATACTGGAAAGTTTAGCTATGGCTATTCTAGTTTCAAGGGTAAAAGGGCATCAATGGAGGACTTCTATGAAACTAGAATTTCTGAAGTCGATGGGAAGATGGTTGCTTTTTTTGGTGTTTTTGATGGTCATGGAGGTTCCAGAACAGCTGAATACCTTAAGCGCAATCTTTTCAAGAACCTAAGTAGCCATCCAGACTTTATCAAAGACACAAAGACAGCTATTACTGAGGTTTTTAGACAGACGGATGCAGACTATATTAATGAAGAGAGAGGTCAGCAGAAAGATGCTGGGTCAACTGCATCAACTGCTGTCCTGTTAGGGGATCGTCTCCTTGTTGCTAATGTTGGGGATTCGAGAGTAGTCGCGTCTAGAGCTGGTTCAGCTATTCCCCTCTCTATTGATCACAAGCCTGATCGATCAGATGAACGGCGAAGGATTGAAGATGCTGGAGGAACTTGGAGGGTTGGTGGTATTCTAGCAGTTTCACGCGCCTTTGGAGATAAGCTACTCAAACGATACGTGGTTGCTGATCCCGAAATTAAGGAAGAAGAAATCCCCAGTGTAGACTTTATAATTATTGCAAGCGATGGACTTTGGAATGTCATATCAAATGAGGAAGCTGTATCATTAGTGCAACACATCCAAGATGCAGAAATGGCTTCAAGAAAACTCATTCAAGAAGCTTATGCACGAGGGAGTACCGACAACATTACGTGTGTCATCGTACAATTTGGTTTATCATAA 1008 45.04 FLFLCSRLAVGASTAAVTKSNSSTEEALFPLPSPSSPPLGDADQETTLQPPEPSSSPPPPVVSEIIMFSRDSNVLFSGGGISFLHGNHTGKFSYGYSSFKGKRASMEDFYETRISEVDGKMVAFFGVFDGHGGSRTAEYLKRNLFKNLSSHPDFIKDTKTAITEVFRQTDADYINEERGQQKDAGSTASTAVLLGDRLLVANVGDSRVVASRAGSAIPLSIDHKPDRSDERRRIEDAGGTWRVGGILAVSRAFGDKLLKRYVVADPEIKEEEIPSVDFIIIASDGLWNVISNEEAVSLVQHIQDAEMASRKLIQEAYARGSTDNITCVIVQFGLS 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18596607 18601152 - CmoCh04G025310.1 Cmo04g02531 381506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02531 335 PANTHER PROTEIN PHOSPHATASE 2C 11-RELATED 56 334 - -
Cmo04g02531 335 SMART PP2C_4 83 330 IPR001932 -
Cmo04g02531 335 SUPERFAMILY PP2C-like 89 332 IPR036457 -
Cmo04g02531 335 PANTHER ALPHABET, ISOFORM E-RELATED 56 334 - -
Cmo04g02531 335 ProSitePatterns PPM-type phosphatase domain signature. 124 132 IPR000222 GO:0043169
Cmo04g02531 335 CDD PP2Cc 92 332 IPR001932 -
Cmo04g02531 335 ProSiteProfiles PPM-type phosphatase domain profile. 93 332 IPR001932 -
Cmo04g02531 335 MobiDBLite consensus disorder prediction 23 61 - -
Cmo04g02531 335 Gene3D - 84 334 IPR036457 -
Cmo04g02531 335 Pfam Protein phosphatase 2C 94 325 IPR001932 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g02531 Cmo15g00643 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02531 Cmo-Chr4:18596607 Cmo09g00390 Cmo-Chr9:1719359 2.25E-121 dispersed
Cmo16g00043 Cmo-Chr16:187305 Cmo04g02531 Cmo-Chr4:18596607 1.37E-33 dispersed
Cmo18g01351 Cmo-Chr18:12755649 Cmo04g02531 Cmo-Chr4:18596607 1.92E-33 dispersed
Cmo17g00505 Cmo-Chr17:4601619 Cmo04g02531 Cmo-Chr4:18596607 7.27E-28 transposed
Cmo20g00992 Cmo-Chr20:5681516 Cmo04g02531 Cmo-Chr4:18596607 4.04E-26 transposed
Cmo15g00643 Cmo-Chr15:3121936 Cmo04g02531 Cmo-Chr4:18596607 1.92E-173 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02531 K17506 - csv:101220053 484.952