Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02535 ATGGTAACTACGGGGCCACCTACTCCTATGGGTGGTGGTGCACAGTCTGTTTCACCCTCACTTCTGCGATCTGATTCTGGATTGCTGGGAGTTCAAGGTGGTCTGCTGCCTTCACAGGCTTTTTCTTCACTCGTGTCGCCCCGCAATCAGTTCAATAGTATGAATATGCTTGGTAATATGTCCAATGTGTCATCTCTCCTTAATCAATCATTTGGAAATGGGGCTCCTAATTCTGGACTTCCATGTCCTGGTGGTGTTGACACCGGAGCAGAGCCAGACCCTCTTTCTGGTGTTGGCAATGGAATGAACTTTAATAATCCTTCATCATCTTTTGTAGCATCAATTATGACAAACCCCGTATCGTTTGTCCAAGGGCAGAATCCACAATTTTCCAACCTTTCTAGCAGCCAGTTGTTATCAGATCAGCAGCAGTCACAACAACTTGAACCCCAGAACTTCCATCAAAGTCAACAGTCTATGGAACAGTTTTCAGCACTTCAGAGCAATCAACAATCACAATTTCAAGCAATTCGAGGGTTGACTGGTGTTGGACCTGTAAAGTTGGAGCCTCAAGTGACCGGCCGTGATCAACATGGACAGCAGCAGCAGCATTTGCAAACATTGAGAAATCTTGGTTCAGTGAAATTAGAATCACAACGACTTCATTCGATGCGAGGTTTGGCACCAGTAAAAATGGAACCCCAACAATCAGACCAGTCATTATTTCTGCAGCAGCAGCAGCATCAACAGCATCAGCATTCGCATCAACATCAACATCAACAACAGCAGCAGTTTCTGCATATGTCTAGACAGTCCTCTCAGGCAGCGGCAGCCCAAATTAATTTAATGCACCAACAAAGGCTTTTGCAATTACAACAACAACATCAGCAACAACATCTCTTAAAAAGTATGCCTCCTCAACGGCCACAATTGCAACAACATTTACAACAGCAGAACCTTCCGCAAAGATCTCCCGTAAAACCAGGATATGAACCTGGAATGTGTGCTCGGCGTCTGACGTATTACATGTATCATCAGCAAAACAGACCTGAAGACAACAACATAGATTTCTGGAGGAAATTTGTTAACGAGTACTTTGCACCTCATGCCAAAAAGAAGTGGTGCGTTTCCATGTATGGATGTGGGCGACAAACAACTGGAGTTTTTCCTCAGGATGCATGGCATTGTGAAATATGCAAACGCAAGCCTGGGCGTGGCTTTGAAGCAACTGCTGAAGTTCTTCCCAGGCTTTTTAAGATCAAGTATGAAAGTGGAACTATGGAGGAGCTACTTTATCTTGACATGCCCCGTGAATATCATAATGCTTCTGGTGAGATCGTCCTGGATTATGCAAAAGCAATACAGGAAAGTGTTTTTGAGCAACTTCGCGTTGTTCGGGATGGCCAACTTCGAATTGTTTTTTCTCCAGACCTTAAGATATGTTCATGGGAATTCTGTGCTCGACGCCATGAAGAACTTATTCCGAGGAGATTATTGATACCTCAGGTTAGTCATCTTGGGGCAGCAGCTCAGAAGTACCAGTCTGCCATTCAAAGCGCATCATCCAATTTATCAACTCCTGAATTGCAAAATAATTGTAACATGTTTGTGGCTTCAGCGCGACAATTAGCTAAAGCCTTGGAAGTTCCGCTGGTAAATGACTTGGGATATACAAAGAGATATGTACGTTGTCTTCAGATATCCGAAGTGGTTAATAGCATGAAGGACTTGATTGATTACAGCAAAGAAACAGGGATCGGTCCAATGGATAGTCTAGCCAAGTTTCCTCGGAGGTCTAGTTCGTCATCGGGGCTTACAACACAAGCTCAAGGTTCTGATGAGCAGCAGCAGCAGCAACAACAACAATCATCCATAGCCCAGCGCCCAAATAATAATCAGAGTTTTGTTCAGGCTTCTGCAGTGCAGATTTCAGCTAGCAATGGTGTGACCAGTGTAAATAGCAACGCCAACCAACCTTCGACATCAAACTCAGCAAGCACCATTGTCGGGCTTCTTCACCAGAATTCTATGAACTCCAGACAGCAGAACACTATGGCTAAACCTAGTAACTCAAATGGGGGAAGTTCTGTTCAGATTCCGTCCCCGGGTTCATCCAGTACGATTCCACCTACACAACCAAACCCTTCTACATTCCAGCCGCCAACTCCCTCGTCATCCAACAATCCTTCGCAACCACCGCATACAGCTGCAAAGAGTTCCAATCAGATGAGTACTGCTAATTCTCCGGCAAACATCTCTATGCAACAATCTGCTTTATCTGGGGATGCTGATCCTAGTGATACACAGTCCTCCGTACAAAAGATCTTACAAGAGATGATGATGAACAATCAAATGAATGGCTCATCTAGTCTGGTTGGCATGGGTTCGGTGGTCAATGATATGAAAAATGTGAATGGGATCTTACCTACAGGCAATACAGGTCTCAACAATGGGGGGAATTGTATAGGGGGAAACGGAACAACCAACGGTGGCTTAGGCATGGGAGGTGGATATGGATCAATGGGGAGTGGGCTTGGGCAGCCTGCCATGGTTAATGGAATGAGAAATGCAATGGGAAACAACTCCATTATGAACAGACGAATAGGAATGGCGTCGCTCGCTCTAGAACAAAGCATGAACGGTCAACAGCAGGATTTGGGAAACCACCTTCTAAGCGGACTTGGAGCTGTAAACGGCTTAAGTAATCTCCAATACGACTGGAAGCCATTCCCATGA 2736 45.03 MVTTGPPTPMGGGAQSVSPSLLRSDSGLLGVQGGLLPSQAFSSLVSPRNQFNSMNMLGNMSNVSSLLNQSFGNGAPNSGLPCPGGVDTGAEPDPLSGVGNGMNFNNPSSSFVASIMTNPVSFVQGQNPQFSNLSSSQLLSDQQQSQQLEPQNFHQSQQSMEQFSALQSNQQSQFQAIRGLTGVGPVKLEPQVTGRDQHGQQQQHLQTLRNLGSVKLESQRLHSMRGLAPVKMEPQQSDQSLFLQQQQHQQHQHSHQHQHQQQQQFLHMSRQSSQAAAAQINLMHQQRLLQLQQQHQQQHLLKSMPPQRPQLQQHLQQQNLPQRSPVKPGYEPGMCARRLTYYMYHQQNRPEDNNIDFWRKFVNEYFAPHAKKKWCVSMYGCGRQTTGVFPQDAWHCEICKRKPGRGFEATAEVLPRLFKIKYESGTMEELLYLDMPREYHNASGEIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELIPRRLLIPQVSHLGAAAQKYQSAIQSASSNLSTPELQNNCNMFVASARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSKETGIGPMDSLAKFPRRSSSSSGLTTQAQGSDEQQQQQQQQSSIAQRPNNNQSFVQASAVQISASNGVTSVNSNANQPSTSNSASTIVGLLHQNSMNSRQQNTMAKPSNSNGGSSVQIPSPGSSSTIPPTQPNPSTFQPPTPSSSNNPSQPPHTAAKSSNQMSTANSPANISMQQSALSGDADPSDTQSSVQKILQEMMMNNQMNGSSSLVGMGSVVNDMKNVNGILPTGNTGLNNGGNCIGGNGTTNGGLGMGGGYGSMGSGLGQPAMVNGMRNAMGNNSIMNRRIGMASLALEQSMNGQQQDLGNHLLSGLGAVNGLSNLQYDWKPFP 911
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18611539 18618239 - CmoCh04G025350.1 Cmo04g02535 381510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02535 911 MobiDBLite consensus disorder prediction 132 170 - -
Cmo04g02535 911 MobiDBLite consensus disorder prediction 232 272 - -
Cmo04g02535 911 Pfam LIM-domain binding protein 338 592 IPR029005 -
Cmo04g02535 911 MobiDBLite consensus disorder prediction 294 330 - -
Cmo04g02535 911 MobiDBLite consensus disorder prediction 679 705 - -
Cmo04g02535 911 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 1 910 - -
Cmo04g02535 911 MobiDBLite consensus disorder prediction 706 728 - -
Cmo04g02535 911 MobiDBLite consensus disorder prediction 729 748 - -
Cmo04g02535 911 MobiDBLite consensus disorder prediction 595 630 - -
Cmo04g02535 911 MobiDBLite consensus disorder prediction 294 324 - -
Cmo04g02535 911 PANTHER LIM DOMAIN-BINDING PROTEIN 1 910 IPR029005 -
Cmo04g02535 911 MobiDBLite consensus disorder prediction 1 21 - -
Cmo04g02535 911 MobiDBLite consensus disorder prediction 679 748 - -
Cmo04g02535 911 MobiDBLite consensus disorder prediction 588 630 - -
Cmo04g02535 911 MobiDBLite consensus disorder prediction 233 272 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g02535 Cmo15g00639 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02535 Cmo-Chr4:18611539 Cmo16g00152 Cmo-Chr16:686930 2.19E-110 dispersed
Cmo15g00639 Cmo-Chr15:3096562 Cmo04g02535 Cmo-Chr4:18611539 0 transposed
Cmo01g01061 Cmo-Chr1:8524802 Cmo04g02535 Cmo-Chr4:18611539 0 wgd
Cmo04g02535 Cmo-Chr4:18611539 Cmo09g01076 Cmo-Chr9:5826816 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02535 - - csv:101218018 1288.09