Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo04g02535 | ATGGTAACTACGGGGCCACCTACTCCTATGGGTGGTGGTGCACAGTCTGTTTCACCCTCACTTCTGCGATCTGATTCTGGATTGCTGGGAGTTCAAGGTGGTCTGCTGCCTTCACAGGCTTTTTCTTCACTCGTGTCGCCCCGCAATCAGTTCAATAGTATGAATATGCTTGGTAATATGTCCAATGTGTCATCTCTCCTTAATCAATCATTTGGAAATGGGGCTCCTAATTCTGGACTTCCATGTCCTGGTGGTGTTGACACCGGAGCAGAGCCAGACCCTCTTTCTGGTGTTGGCAATGGAATGAACTTTAATAATCCTTCATCATCTTTTGTAGCATCAATTATGACAAACCCCGTATCGTTTGTCCAAGGGCAGAATCCACAATTTTCCAACCTTTCTAGCAGCCAGTTGTTATCAGATCAGCAGCAGTCACAACAACTTGAACCCCAGAACTTCCATCAAAGTCAACAGTCTATGGAACAGTTTTCAGCACTTCAGAGCAATCAACAATCACAATTTCAAGCAATTCGAGGGTTGACTGGTGTTGGACCTGTAAAGTTGGAGCCTCAAGTGACCGGCCGTGATCAACATGGACAGCAGCAGCAGCATTTGCAAACATTGAGAAATCTTGGTTCAGTGAAATTAGAATCACAACGACTTCATTCGATGCGAGGTTTGGCACCAGTAAAAATGGAACCCCAACAATCAGACCAGTCATTATTTCTGCAGCAGCAGCAGCATCAACAGCATCAGCATTCGCATCAACATCAACATCAACAACAGCAGCAGTTTCTGCATATGTCTAGACAGTCCTCTCAGGCAGCGGCAGCCCAAATTAATTTAATGCACCAACAAAGGCTTTTGCAATTACAACAACAACATCAGCAACAACATCTCTTAAAAAGTATGCCTCCTCAACGGCCACAATTGCAACAACATTTACAACAGCAGAACCTTCCGCAAAGATCTCCCGTAAAACCAGGATATGAACCTGGAATGTGTGCTCGGCGTCTGACGTATTACATGTATCATCAGCAAAACAGACCTGAAGACAACAACATAGATTTCTGGAGGAAATTTGTTAACGAGTACTTTGCACCTCATGCCAAAAAGAAGTGGTGCGTTTCCATGTATGGATGTGGGCGACAAACAACTGGAGTTTTTCCTCAGGATGCATGGCATTGTGAAATATGCAAACGCAAGCCTGGGCGTGGCTTTGAAGCAACTGCTGAAGTTCTTCCCAGGCTTTTTAAGATCAAGTATGAAAGTGGAACTATGGAGGAGCTACTTTATCTTGACATGCCCCGTGAATATCATAATGCTTCTGGTGAGATCGTCCTGGATTATGCAAAAGCAATACAGGAAAGTGTTTTTGAGCAACTTCGCGTTGTTCGGGATGGCCAACTTCGAATTGTTTTTTCTCCAGACCTTAAGATATGTTCATGGGAATTCTGTGCTCGACGCCATGAAGAACTTATTCCGAGGAGATTATTGATACCTCAGGTTAGTCATCTTGGGGCAGCAGCTCAGAAGTACCAGTCTGCCATTCAAAGCGCATCATCCAATTTATCAACTCCTGAATTGCAAAATAATTGTAACATGTTTGTGGCTTCAGCGCGACAATTAGCTAAAGCCTTGGAAGTTCCGCTGGTAAATGACTTGGGATATACAAAGAGATATGTACGTTGTCTTCAGATATCCGAAGTGGTTAATAGCATGAAGGACTTGATTGATTACAGCAAAGAAACAGGGATCGGTCCAATGGATAGTCTAGCCAAGTTTCCTCGGAGGTCTAGTTCGTCATCGGGGCTTACAACACAAGCTCAAGGTTCTGATGAGCAGCAGCAGCAGCAACAACAACAATCATCCATAGCCCAGCGCCCAAATAATAATCAGAGTTTTGTTCAGGCTTCTGCAGTGCAGATTTCAGCTAGCAATGGTGTGACCAGTGTAAATAGCAACGCCAACCAACCTTCGACATCAAACTCAGCAAGCACCATTGTCGGGCTTCTTCACCAGAATTCTATGAACTCCAGACAGCAGAACACTATGGCTAAACCTAGTAACTCAAATGGGGGAAGTTCTGTTCAGATTCCGTCCCCGGGTTCATCCAGTACGATTCCACCTACACAACCAAACCCTTCTACATTCCAGCCGCCAACTCCCTCGTCATCCAACAATCCTTCGCAACCACCGCATACAGCTGCAAAGAGTTCCAATCAGATGAGTACTGCTAATTCTCCGGCAAACATCTCTATGCAACAATCTGCTTTATCTGGGGATGCTGATCCTAGTGATACACAGTCCTCCGTACAAAAGATCTTACAAGAGATGATGATGAACAATCAAATGAATGGCTCATCTAGTCTGGTTGGCATGGGTTCGGTGGTCAATGATATGAAAAATGTGAATGGGATCTTACCTACAGGCAATACAGGTCTCAACAATGGGGGGAATTGTATAGGGGGAAACGGAACAACCAACGGTGGCTTAGGCATGGGAGGTGGATATGGATCAATGGGGAGTGGGCTTGGGCAGCCTGCCATGGTTAATGGAATGAGAAATGCAATGGGAAACAACTCCATTATGAACAGACGAATAGGAATGGCGTCGCTCGCTCTAGAACAAAGCATGAACGGTCAACAGCAGGATTTGGGAAACCACCTTCTAAGCGGACTTGGAGCTGTAAACGGCTTAAGTAATCTCCAATACGACTGGAAGCCATTCCCATGA | 2736 | 45.03 | MVTTGPPTPMGGGAQSVSPSLLRSDSGLLGVQGGLLPSQAFSSLVSPRNQFNSMNMLGNMSNVSSLLNQSFGNGAPNSGLPCPGGVDTGAEPDPLSGVGNGMNFNNPSSSFVASIMTNPVSFVQGQNPQFSNLSSSQLLSDQQQSQQLEPQNFHQSQQSMEQFSALQSNQQSQFQAIRGLTGVGPVKLEPQVTGRDQHGQQQQHLQTLRNLGSVKLESQRLHSMRGLAPVKMEPQQSDQSLFLQQQQHQQHQHSHQHQHQQQQQFLHMSRQSSQAAAAQINLMHQQRLLQLQQQHQQQHLLKSMPPQRPQLQQHLQQQNLPQRSPVKPGYEPGMCARRLTYYMYHQQNRPEDNNIDFWRKFVNEYFAPHAKKKWCVSMYGCGRQTTGVFPQDAWHCEICKRKPGRGFEATAEVLPRLFKIKYESGTMEELLYLDMPREYHNASGEIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELIPRRLLIPQVSHLGAAAQKYQSAIQSASSNLSTPELQNNCNMFVASARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSKETGIGPMDSLAKFPRRSSSSSGLTTQAQGSDEQQQQQQQQSSIAQRPNNNQSFVQASAVQISASNGVTSVNSNANQPSTSNSASTIVGLLHQNSMNSRQQNTMAKPSNSNGGSSVQIPSPGSSSTIPPTQPNPSTFQPPTPSSSNNPSQPPHTAAKSSNQMSTANSPANISMQQSALSGDADPSDTQSSVQKILQEMMMNNQMNGSSSLVGMGSVVNDMKNVNGILPTGNTGLNNGGNCIGGNGTTNGGLGMGGGYGSMGSGLGQPAMVNGMRNAMGNNSIMNRRIGMASLALEQSMNGQQQDLGNHLLSGLGAVNGLSNLQYDWKPFP | 911 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 18611539 | 18618239 | - | CmoCh04G025350.1 | Cmo04g02535 | 381510 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo04g02535 | 911 | MobiDBLite | consensus disorder prediction | 132 | 170 | - | - | |
Cmo04g02535 | 911 | MobiDBLite | consensus disorder prediction | 232 | 272 | - | - | |
Cmo04g02535 | 911 | Pfam | LIM-domain binding protein | 338 | 592 | IPR029005 | - | |
Cmo04g02535 | 911 | MobiDBLite | consensus disorder prediction | 294 | 330 | - | - | |
Cmo04g02535 | 911 | MobiDBLite | consensus disorder prediction | 679 | 705 | - | - | |
Cmo04g02535 | 911 | PANTHER | LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED | 1 | 910 | - | - | |
Cmo04g02535 | 911 | MobiDBLite | consensus disorder prediction | 706 | 728 | - | - | |
Cmo04g02535 | 911 | MobiDBLite | consensus disorder prediction | 729 | 748 | - | - | |
Cmo04g02535 | 911 | MobiDBLite | consensus disorder prediction | 595 | 630 | - | - | |
Cmo04g02535 | 911 | MobiDBLite | consensus disorder prediction | 294 | 324 | - | - | |
Cmo04g02535 | 911 | PANTHER | LIM DOMAIN-BINDING PROTEIN | 1 | 910 | IPR029005 | - | |
Cmo04g02535 | 911 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Cmo04g02535 | 911 | MobiDBLite | consensus disorder prediction | 679 | 748 | - | - | |
Cmo04g02535 | 911 | MobiDBLite | consensus disorder prediction | 588 | 630 | - | - | |
Cmo04g02535 | 911 | MobiDBLite | consensus disorder prediction | 233 | 272 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo04g02535 | Cmo15g00639 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g02535 | Cmo-Chr4:18611539 | Cmo16g00152 | Cmo-Chr16:686930 | 2.19E-110 | dispersed | |
Cmo15g00639 | Cmo-Chr15:3096562 | Cmo04g02535 | Cmo-Chr4:18611539 | 0 | transposed | |
Cmo01g01061 | Cmo-Chr1:8524802 | Cmo04g02535 | Cmo-Chr4:18611539 | 0 | wgd | |
Cmo04g02535 | Cmo-Chr4:18611539 | Cmo09g01076 | Cmo-Chr9:5826816 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo04g02535 | - | - | csv:101218018 | 1288.09 |