Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02539 ATGCCTCGTCGTAGGGACGACGATGAAGATGACGATATTGATGCTGATGATGAAGAGTATGAGGATGAGATGGAGCAGCCTTTGGATGACGAGGAGGAAGAGGAAGATCGCTCGAGTAGGAAGCGGAGGAGATCGAATTTTATAGACGATGTTGCTGAGGAGGATGAGGATGAGGAGGAAGAAGAGGAGGATGATGAGGATTTTGGTGGCGGTGCTAGGCGGCGGCGTGCTAAGAGGCCTAGTGGTTCTCAGTTTTTGGATATTGAGGCGGAGGTCGATAGCGAGGATGATGAAGAGGAGGACGATGGAGAGGACGACTTCATAGTTGATGGTGCAACTGATATACCCGATGAAGATGAAAATAGAAGGATGCATCGCCGCCCATTGCTACCCCGAGAGGATGAACAGGAGGATGTTGAAGCACTTGAAAGAAGGATTCAAGCTAGATATGCAAGGTCAAATCATATGGAATATGACGAGGAGACAACTGAAGTGGAGCAGCAAGCTCTTCTACCTTCTGTAAGGGATCCAAAGTTGTGGATGGTTAAATGCGCGATTGGCCATGAGAGAGAGGCTGCTGTTTGTCTAATGCAAAAATGCATTGATAGAGGGCCTGAAATGCAAATAAGATCTGCAATTGCTCTTGATCATTTGAAGAACTTTATATATATTGAAGCGGACAAAGAAGCCCATGTTAGAGAGGCTTGTAAAGGTCTACGCAACATATATTCACAAAAAGTAATGCTTGTTCCAATTAAAGAGATGACTGATGTTCTCTCTGTTGAAAGCAAAGCAATTGATCTTTCCAGAGATACGTGGGTCAGGATGAAGATTGGGACATACAAGGGGGATCTTGCCAAGGTGGTGGATGTTGATAATGTGCGGCAGAGGGTTACTGTGAAACTTATTCCTCGGATAGACCTACAGGCTCTTGCAAACAAATTGGAAGGTAGAGAAGTTGCTAAGAAGAAGGCATTTGTTCCTCCACCCCGTTTTATGAATATTGATGAAGCTAGAGAGTTGCATATCCGTGTAGAGCGCAGACGCGATCCCATTACTGGAGAATACTTTGAGAACATAGGTGGCATGTTTTTCAAAGATGGTTTCTTGTACAAAACAGTGTCCATGAAGTCAATAAGTGCCCAAAACATAAAACCAACTTTTGATGAACTTGAGAAATTTCGAAAGCCTGGGGAAAATGGTGATGGGGATATTGCTAGTTTGTCTACCTTGTTTGCAAACCGAAAGAAAGGGCACTTTATGAAGGGTGATGCTGTCATTGTTGTCAAGGGGGATCTCAAGAATCTGAAAGGATGGGTAGAGAAAGTAGAGGAAGAGAATGTCCACATCAGACCAGAAATGAAAGGCCTTCCTAAAACTCTTGCTGTGAATGAAAGAGAACTTTGCAAGTACTTTGAGCCTGGAAATCATGTAAAAGTTGTAACGGGGACTCAGGAGGGGGCTACTGGTATGGTTGTGAAGGTGGAGCAGCATGTGCTTATTATACTGTCTGATACAACCAAGGAACACATCCGGGTATTTGCTGATGATGTTGTTGAGAGCTCTGAGGTAACAACTGGTGTGACGAAAATTGGGGATTATGAACTTCATGATCTTGTGTTATTGGATAATATGAGCTTTGGCGTGATTATACGTGTAGAAAGTGAGGCTTTTCAGGTTCTTAAGGGTATTCCAGATAGACCTGAGGTTGATATCGTTAAGTTGAGGGAAATAAAAAGTAAGATTGACAAGAAAATCAGTGTTCAAGATCGACACAATAACACAATTTCCGCTAAAGACATTGTCAGGATTCTTGAAGGTCCTTGTAAGGGAAAACAAGGTCCAGTGGAGCACATATACAGAGGTGTGCTGTTCATTTATGATCGCCATCACTTGGAACATGCTGGCTTTATTTGTGTTAAATCACATTCTTGTGTTGTTGTGGGTGGATCCCGAACTAATGGAAATAGAAATGGTAATTCCTACTCTAGGCTTGCTGGCCTTGGGGCTCCACCTCGTTTTCCTCAGTCGCCTAAGAGATTTTCCAGAGGAGGTCCCCCGAATGATTCTGGTGGAAGACATAGAGGTGGAAGAGGGCATCATGATGGTTTGGTTGGATCAACAGTGAAAGTTCGGCAGGGTCCTTACAAGGGTTACCGTGGGCGTGTTGTTGAAATAAAAGGCCAACTGGTTCGAGTAGAGCTTGAGTCTCAAATGAAAGTTGTCACAGTTGACCGCAATTTTATCTCAGATAATGTGGCTGTTTCAACCCCCTATCGTGATACATCTAGATATGGTATGGGAAGTGAAACTCCCATGCATCCTTCTCGAACTCCTCTTCATCCGTACATGACCCCAATGAGAGATATGGGAACAACGCCAAGTCATGATGGCATGAGGACACCAATGCGAAATCGAGCATGGAATCCATACGCACCCATGAGTCCGTCAAGGGAGAACTGGGAGGAAGGGAACCCTGCAACTTGGGGAGCGAGTCCACAGTACCAGCCAGGAAGCCCTCCTTCACGAACTTACGAAGCTCCAACTCCTGGTACTGGTTGGGCCAACACTCCTGGTGGCAGTTACAGTGATGCCGGTACCCCTCGGGATAGTGGTTCAGCCTATGCAAATGCCCCGAGCCCATACTTGCCTTCAACTCCTGGTGGACAGCCCATGACACCAAATTCAGCATCCTATCTTCCTGGTACTCCTGGCGGGCAGCCAATGACACCAGGCACAGGTGGTCTGGATATGATGTCTCCTGTTATAGGTGGTGATGCCGACGGACCATGGTACATGCCAGACATATTGGTCAATGTCCGGAGAGGAGATGAGCTGATCATGGGAGTAATCCGTGAGGTGCTTCCGGATGGCTCATGTAGGGTAGGTCTTGGGTCAAGTGGAAATGGTGAAACGATAACAGCCATTTCTAGCGACATAGAAGCCATTGTTCCTAGGAAGTCGGACAAGATCAAGATAATGGGTGGTGCACTGCGTGGCGCCACTGGGAAGTTGATTGGTGTGGATGGCACCGATGGAATAGTGAAGGTAGACGACACTCTTGATGTTAAGATTTTGGATTTAGTTATTCTTGCAAAACTAGCCCAACCATAA 3114 45.7 MPRRRDDDEDDDIDADDEEYEDEMEQPLDDEEEEEDRSSRKRRRSNFIDDVAEEDEDEEEEEEDDEDFGGGARRRRAKRPSGSQFLDIEAEVDSEDDEEEDDGEDDFIVDGATDIPDEDENRRMHRRPLLPREDEQEDVEALERRIQARYARSNHMEYDEETTEVEQQALLPSVRDPKLWMVKCAIGHEREAAVCLMQKCIDRGPEMQIRSAIALDHLKNFIYIEADKEAHVREACKGLRNIYSQKVMLVPIKEMTDVLSVESKAIDLSRDTWVRMKIGTYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVAKKKAFVPPPRFMNIDEARELHIRVERRRDPITGEYFENIGGMFFKDGFLYKTVSMKSISAQNIKPTFDELEKFRKPGENGDGDIASLSTLFANRKKGHFMKGDAVIVVKGDLKNLKGWVEKVEEENVHIRPEMKGLPKTLAVNERELCKYFEPGNHVKVVTGTQEGATGMVVKVEQHVLIILSDTTKEHIRVFADDVVESSEVTTGVTKIGDYELHDLVLLDNMSFGVIIRVESEAFQVLKGIPDRPEVDIVKLREIKSKIDKKISVQDRHNNTISAKDIVRILEGPCKGKQGPVEHIYRGVLFIYDRHHLEHAGFICVKSHSCVVVGGSRTNGNRNGNSYSRLAGLGAPPRFPQSPKRFSRGGPPNDSGGRHRGGRGHHDGLVGSTVKVRQGPYKGYRGRVVEIKGQLVRVELESQMKVVTVDRNFISDNVAVSTPYRDTSRYGMGSETPMHPSRTPLHPYMTPMRDMGTTPSHDGMRTPMRNRAWNPYAPMSPSRENWEEGNPATWGASPQYQPGSPPSRTYEAPTPGTGWANTPGGSYSDAGTPRDSGSAYANAPSPYLPSTPGGQPMTPNSASYLPGTPGGQPMTPGTGGLDMMSPVIGGDADGPWYMPDILVNVRRGDELIMGVIREVLPDGSCRVGLGSSGNGETITAISSDIEAIVPRKSDKIKIMGGALRGATGKLIGVDGTDGIVKVDDTLDVKILDLVILAKLAQP 1037
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18640122 18650094 + CmoCh04G025390.1 Cmo04g02539 381514

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02539 1037 MobiDBLite consensus disorder prediction 656 707 - -
Cmo04g02539 1037 CDD NGN_Euk 178 260 IPR039385 -
Cmo04g02539 1037 MobiDBLite consensus disorder prediction 889 903 - -
Cmo04g02539 1037 MobiDBLite consensus disorder prediction 760 781 - -
Cmo04g02539 1037 SUPERFAMILY Translation proteins SH3-like domain 463 522 IPR008991 -
Cmo04g02539 1037 ProSitePatterns Ribosomal protein L24 signature. 423 440 IPR005825 GO:0003735|GO:0005840|GO:0006412
Cmo04g02539 1037 Pfam Early transcription elongation factor of RNA pol II, NGN section 178 259 IPR005100 -
Cmo04g02539 1037 CDD KOW_Spt5_3 471 521 IPR041976 -
Cmo04g02539 1037 Gene3D - 267 309 IPR014722 -
Cmo04g02539 1037 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT5 27 1035 - -
Cmo04g02539 1037 CDD KOW_Spt5_2 420 470 IPR041975 -
Cmo04g02539 1037 CDD KOW_Spt5_5 702 750 IPR041978 -
Cmo04g02539 1037 Gene3D - 688 752 IPR014722 -
Cmo04g02539 1037 MobiDBLite consensus disorder prediction 89 114 - -
Cmo04g02539 1037 Coils Coil 132 152 - -
Cmo04g02539 1037 CDD KOW_Spt5_4 599 641 IPR041977 -
Cmo04g02539 1037 CDD KOW_Spt5_1 271 308 IPR041973 -
Cmo04g02539 1037 Pfam Spt5 transcription elongation factor, acidic N-terminal 85 172 IPR022581 -
Cmo04g02539 1037 Gene3D - 414 471 IPR014722 -
Cmo04g02539 1037 MobiDBLite consensus disorder prediction 9 33 - -
Cmo04g02539 1037 Pfam KOW motif 705 735 IPR005824 -
Cmo04g02539 1037 Pfam KOW motif 474 501 IPR005824 -
Cmo04g02539 1037 MobiDBLite consensus disorder prediction 793 908 - -
Cmo04g02539 1037 PIRSF Spt5 2 1037 IPR017071 GO:0006357|GO:0032784
Cmo04g02539 1037 MobiDBLite consensus disorder prediction 51 67 - -
Cmo04g02539 1037 MobiDBLite consensus disorder prediction 1 139 - -
Cmo04g02539 1037 CDD KOW_Spt5_6 978 1035 IPR041980 -
Cmo04g02539 1037 Gene3D - 474 523 IPR014722 -
Cmo04g02539 1037 MobiDBLite consensus disorder prediction 827 880 - -
Cmo04g02539 1037 SMART nusgn_4 176 262 IPR006645 GO:0140673
Cmo04g02539 1037 MobiDBLite consensus disorder prediction 34 50 - -
Cmo04g02539 1037 PANTHER SUPPRESSOR OF TY 5 27 1035 IPR039659 GO:0006357|GO:0032784
Cmo04g02539 1037 MobiDBLite consensus disorder prediction 115 139 - -
Cmo04g02539 1037 Gene3D - 158 260 IPR036735 GO:0006355
Cmo04g02539 1037 SMART kow_9 702 729 IPR005824 -
Cmo04g02539 1037 SMART kow_9 471 498 IPR005824 -
Cmo04g02539 1037 SMART kow_9 419 446 IPR005824 -
Cmo04g02539 1037 SMART kow_9 984 1011 IPR005824 -
Cmo04g02539 1037 SMART kow_9 595 622 IPR005824 -
Cmo04g02539 1037 SMART kow_9 267 294 IPR005824 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02539 K15172 SUPT5H, SPT5; transcription elongation factor SPT5 - csv:101204562 1821.21
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g02539 Cmo15g00634 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02539 Cmo-Chr4:18640122 Cmo15g00509 Cmo-Chr15:2338712 5.76E-24 dispersed
Cmo15g00634 Cmo-Chr15:3063254 Cmo04g02539 Cmo-Chr4:18640122 7.64E-128 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1207 Blo01g01326 . Bda01g00691 . Bpe02g00614 . . Bma01g02111 Cmo04g02539 Cmo15g00634 . . . . Sed01g2883 . Cpe13g00663 Bhi04g01823 Tan11g1195 Cmetu03g0776 . Hepe02g2759 . Lcy10g1309 Cla08g00661 Cam08g1091 Cec08g0676 Cco08g0785 Clacu08g0796 . Cre08g0599 . . . . . . . Cme03g00404 . . . . . . . . . . . . . Car04g02336 Car15g00576 Cpe01g02098 . . . . . . . . . . . . . . . Lsi08g00519 . Chy03g00585 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005509 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 2 3 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g02539 Cmo_Chr04 FPKM 6.418706 8.829404 6.676003 6.903606 9.539736 8.641968 9.886914 12.335218 10.460372 12.926067