Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02540 ATGGGGCTGTTTGGAGCCATGGAGCGGTGGAGAAGCCTTGGGGCTGTGTGGGGTTGGCTCTTCATCGTCGTCTTACGGGTGGCAGTCGAGGGCTTCCCGGCCGAGGATCTGGTCGGGAGGCTGCCCGGCCAGCCAAACGTCACTTTCAGACAATTTGCAGGCTATGTCGATGTCGATGTCGATGCCGGGAGAAGCTTGTTTTACTACTTTGCTGAAGCTCAGCAAGATGCCCATCTCCTGCCCCTTACTCTCTGGCTCAATGGAGGGCCCGGTTGTTCGTCTGTGGGCGGCGGTGCGTTCACGGAGTTGGGGCCATTTTATCCGAAAAGAGATGGTCGAGGGCTTCGAAGAAACTCGATGTCTTGGAATAGAGCCTCTAATCTGCTGTTTGTGGAGTCTCCTGCTGGGGTAGGATGGTCATACTCCAACACATCCTCGGACTACGCTACGGGCGATTCCTCTACGGTATTTTTATTAATTTTGGCACCGAGGGACATGCTCACCTTCATGTTAAAATGGTACGAAAAGTTTCCTGCATTCAAAGATCGGCCATTTTTCCTCACCGGAGAAAGTTACGCGGGTCATTACATTTCTCAGCTAGCCAATGCAATACTAGACTACAACACTAATTCAAACGCCTTCAAGGACGCACCAGCGGTGTACGAGTTCTTTTGGTCGCATGGCATGATCTCCGATGAAGTGGGGCTCGCAATCATGAGAGACTGCGATTTTGAAGATTATGTGCTGACCAATCCACACAATGTCAGCAAGTCATGCAACCAAGCCATGGGCGATGCCAATCGCATCGTGGGTGATTACATTAACAACTATGGTGTTCTTTTTGATGTTTGCTATCCATCCCTTGTCCAGCAAGAGCTCAGATTGAAGAAATTGGCGAGTAAAATGAGCATGGGAGTTGATGTGTGTATGAGCTATGAAAGGCAGTTTTATTTGAACTTGCCGGAACTTCAAGTGGCTCTTCATGCTAATCGTACTAAGTTGCCTTATGAATGGTCCATGTGCAGTGATGGAGATCAAGATTCAGTGGTGCCACTAATGGGATCTAGAACGCTAGTTCGAGAGCTAGCTAATGAGCTTAAATTCAAGATCACAGTACCGTACGGAGCTTGGTTTCACAAGGGACAAGTGGGCGGGTGGGCGATCGAGTATGGCAATATACTGACATTTGCAACGGTTCGTGGGGCATCCCATATGGTACCCTACGCCCAGCCCTCTAGATCTTTACATTTGTTCTCTTCTTTTGTTCGAGGGAGGAGGCTGCCCAATACCACTCGCCCTTCCATTGATGAATGA 1314 49.47 MGLFGAMERWRSLGAVWGWLFIVVLRVAVEGFPAEDLVGRLPGQPNVTFRQFAGYVDVDVDAGRSLFYYFAEAQQDAHLLPLTLWLNGGPGCSSVGGGAFTELGPFYPKRDGRGLRRNSMSWNRASNLLFVESPAGVGWSYSNTSSDYATGDSSTVFLLILAPRDMLTFMLKWYEKFPAFKDRPFFLTGESYAGHYISQLANAILDYNTNSNAFKDAPAVYEFFWSHGMISDEVGLAIMRDCDFEDYVLTNPHNVSKSCNQAMGDANRIVGDYINNYGVLFDVCYPSLVQQELRLKKLASKMSMGVDVCMSYERQFYLNLPELQVALHANRTKLPYEWSMCSDGDQDSVVPLMGSRTLVRELANELKFKITVPYGAWFHKGQVGGWAIEYGNILTFATVRGASHMVPYAQPSRSLHLFSSFVRGRRLPNTTRPSIDE 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18651098 18653985 - CmoCh04G025400.1 Cmo04g02540 381515

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02540 437 PANTHER CARBOXYPEPTIDASE 344 431 - -
Cmo04g02540 437 Gene3D - 344 426 - -
Cmo04g02540 437 PRINTS Carboxypeptidase C serine protease (S10) family signature 173 198 IPR001563 GO:0004185|GO:0006508
Cmo04g02540 437 PRINTS Carboxypeptidase C serine protease (S10) family signature 394 407 IPR001563 GO:0004185|GO:0006508
Cmo04g02540 437 PRINTS Carboxypeptidase C serine protease (S10) family signature 131 141 IPR001563 GO:0004185|GO:0006508
Cmo04g02540 437 PRINTS Carboxypeptidase C serine protease (S10) family signature 118 130 IPR001563 GO:0004185|GO:0006508
Cmo04g02540 437 ProSitePatterns Serine carboxypeptidases, histidine active site. 394 411 IPR033124 GO:0004185
Cmo04g02540 437 ProSitePatterns Serine carboxypeptidases, serine active site. 187 194 IPR018202 GO:0004185
Cmo04g02540 437 PANTHER CARBOXYPEPTIDASE 25 343 - -
Cmo04g02540 437 SUPERFAMILY alpha/beta-Hydrolases 27 431 IPR029058 -
Cmo04g02540 437 Gene3D alpha/beta hydrolase 33 285 IPR029058 -
Cmo04g02540 437 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 344 431 IPR001563 GO:0004185|GO:0006508
Cmo04g02540 437 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 25 343 IPR001563 GO:0004185|GO:0006508
Cmo04g02540 437 Gene3D - 309 343 - -
Cmo04g02540 437 Pfam Serine carboxypeptidase 43 343 IPR001563 GO:0004185|GO:0006508
Cmo04g02540 437 Pfam Serine carboxypeptidase 344 424 IPR001563 GO:0004185|GO:0006508
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02540 K16297 SCPL-II; serine carboxypeptidase-like clade II [EC:3.4.16.-] - csv:101207193 714.146
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g02540 Cmo09g01099 CCT
Cmo04g02540 Cmo15g00631 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02540 Cmo-Chr4:18651098 Cmo10g00021 Cmo-Chr10:131458 1.35E-107 dispersed
Cmo15g00631 Cmo-Chr15:3056255 Cmo04g02540 Cmo-Chr4:18651098 0 wgd
Cmo04g02540 Cmo-Chr4:18651098 Cmo09g01099 Cmo-Chr9:6097855 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1215 . . . . . . . . Cmo04g02540 Cmo15g00631 . Cma09g01090 . . Sed11g1328 Cpe06g00890 . Bhi04g01820 Tan11g1189 Cmetu01g2322 . Hepe02g2767 . Lcy10g1313 Cla08g00662 Cam08g1093 Cec08g0678 Cco08g0787 Clacu08g0798 . Cre08g0601 . Cone7ag1433 . Cone20ag0399 . . . Cme03g00398 . Blo18g00222 . . . . Bma01g00874 . . . Cmo09g01099 . . Car04g02338 Car09g00988 Cpe01g02099 . Bhi09g01511 . . . . Mch11g1423 . Cla09g00918 Cam09g0970 Cec09g0975 Cco09g0981 . . Cre09g0939 Lsi08g00522 . Chy03g00587 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002124 1 2 1 1 1 2 3 2 2 2 2 2 1 2 3 3 2 3 2 2 2 2 2 2 2 2 3 7 2 2 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g02540 Cmo_Chr04 FPKM 3.686375 3.773395 9.735821 9.188466 32.744946 28.260862 32.598869 19.068375 20.518871 20.531933