Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02542 ATGGTGCTGATATCGGTCGTTCGGGATTATATCAACAAGATGTTGCAGGACATCTCCGGCATGAAGGTTCTCATCCTTGATTCTCAGACGGTCAGTGTTGTTAGTGTGGTGTACTCACAGTCGGAACTTCTTCAAAGAGAAGTTTTTTTGGTTGAATTGGTAGATACCATTTCTATGTCAAGAGAATCCATGTACCATCTTAAAGCGGTTTGCTTTCTCAGACCAACATCAGAGAATGTACAGCTTTTGCGTCGTGAGCTGGCTAATCCTAGATTTGGGGAGTATCATCTCTTTTTCTCCAACATTTTGAAGGAAACTCAGATTCATATACTTGCTGATTCAGACGAGCAGGATGTTGTCCAGCAAGTTGTGGAGTTTTATGCGGATTTTGTGGCCATTGATCCATATCATTTCACTTTAAACATGGCATCAAACCATAGATACATGATCCCGGCAGTTGTTGATCCTCCAAGTTTGCAACATTTCTGTGACCGAGTTGTAGATGGCATTGCAGCACTTTTCTTGGCCCTAAAACAAAGACCTGTTATTCGGTACCAAAGGACTTCTGATATTGCCAGGAGGATAGCACAGGAAACATCAAAACTTATGTATCAGCAAGAAAGTGGTCTGTTTGATTTTCGAAGAATGGAAGTTTCCCCTTTGTTGCTGGTAATTGATAGGAGGGATGACCCGTTGACTCCCCTGCTGAATCAATGGACTTATCAGGCAATGGTTCATGAATTGCTAGGTATTCAAGACAATAAAGTGGACTTGAAAAGCATTGGGAAGTCTTCAAAGGACCAACAGGAGGTTGTGCTATCATCAGAACAAGATTCATTTTATAAAGCTAACATGTATGAGAATTTTGGAGATATTGGGATGAATATCAAGAAGTTGGTGGATGATTTCCAGCAAATTGCCAAAAGTAACCAGAACATACAAACAATAGAGGACATGGCCAAGTTTGTTGATAATTATCCGGAGTACAGAAAAATGCACGGTAATGTTTCAAAGCACGTGACATTGGTGACAGAAATGAGTAAAATAGTAGAGGAGAGAAAGCTTATGTTAGTTTCACAGACAGAACAGGAATTGGCTTGCAATGGTGGGCAAGTGGCTGCTTTTGAGGCTGTAACAAATCTTTTGAACAATGAGAATATTTCTGATATAGACCGTGTGCGCCTAGTTATGCTGTATGCCTTACGGTATGAGAAAGAGAGCCCTGTTCAACTGATGCAGCTTTTCAACAAACTGGCTTCTCGTTCTGCAAAATATAAAACTGGGCTTGTCCAGTTTCTTTTAAAACAAGCTGGTGTTGATAAGAGAACGGGTGATCTTTATGGGAATCGAGATCTTTTGAATATTGCTCGTAACATGGCTCGTGGATTAAAGGGGGTTGAGAACGTGTACACTCAGCATCAACCTCTTTTGGTCCAGACCATGGAAAGTATAATCAAAGGACGATTGAGAGATATGGACTACCCATTTGTTGGGAATCACTTTCAGCAAGCAAGGCCCCAAGAAGTCATCATTTTTATTGTAGGTGGGACAACATATGAGGAGTCACGTGCGGTAGCTTTACAAAACGCAACTACTTCTGGAATACGTTTTATACTGGGTGGTTCTGTCGTTCTAAATTCTAAGAGGTTTTTGAAGGACTTGGAAGAAGCTCAGCGTATATCTCGTTCAAGCGCCTCTGTGATTTAA 1707 41.01 MVLISVVRDYINKMLQDISGMKVLILDSQTVSVVSVVYSQSELLQREVFLVELVDTISMSRESMYHLKAVCFLRPTSENVQLLRRELANPRFGEYHLFFSNILKETQIHILADSDEQDVVQQVVEFYADFVAIDPYHFTLNMASNHRYMIPAVVDPPSLQHFCDRVVDGIAALFLALKQRPVIRYQRTSDIARRIAQETSKLMYQQESGLFDFRRMEVSPLLLVIDRRDDPLTPLLNQWTYQAMVHELLGIQDNKVDLKSIGKSSKDQQEVVLSSEQDSFYKANMYENFGDIGMNIKKLVDDFQQIAKSNQNIQTIEDMAKFVDNYPEYRKMHGNVSKHVTLVTEMSKIVEERKLMLVSQTEQELACNGGQVAAFEAVTNLLNNENISDIDRVRLVMLYALRYEKESPVQLMQLFNKLASRSAKYKTGLVQFLLKQAGVDKRTGDLYGNRDLLNIARNMARGLKGVENVYTQHQPLLVQTMESIIKGRLRDMDYPFVGNHFQQARPQEVIIFIVGGTTYEESRAVALQNATTSGIRFILGGSVVLNSKRFLKDLEEAQRISRSSASVI 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18660831 18667071 + CmoCh04G025420.1 Cmo04g02542 381517

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02542 568 Gene3D - 353 474 - -
Cmo04g02542 568 Gene3D - 155 555 IPR027482 -
Cmo04g02542 568 Gene3D - 3 128 IPR043154 -
Cmo04g02542 568 PANTHER VESICLE PROTEIN SORTING-ASSOCIATED 3 555 IPR001619 GO:0016192
Cmo04g02542 568 SUPERFAMILY Sec1/munc18-like (SM) proteins 3 556 IPR036045 -
Cmo04g02542 568 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 45 3 555 - -
Cmo04g02542 568 PIRSF VPS45_Sec1 1 565 IPR001619 GO:0016192
Cmo04g02542 568 Gene3D Syntaxin Binding Protein 1; Chain A, domain 2 238 351 IPR043127 -
Cmo04g02542 568 Pfam Sec1 family 22 553 IPR001619 GO:0016192
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02542 K12479 VPS45; vacuolar protein sorting-associated protein 45 - csv:101203589 1043.88
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g02542 Cmo15g00629 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02542 Cmo-Chr4:18660831 Cmo11g01780 Cmo-Chr11:12526372 2.11E-16 dispersed
Cmo02g01048 Cmo-Chr2:6387105 Cmo04g02542 Cmo-Chr4:18660831 2.25E-28 transposed
Cmo08g00923 Cmo-Chr8:6023131 Cmo04g02542 Cmo-Chr4:18660831 2.60E-22 transposed
Cmo15g01511 Cmo-Chr15:10259982 Cmo04g02542 Cmo-Chr4:18660831 3.38E-27 transposed
Cmo15g00629 Cmo-Chr15:3047350 Cmo04g02542 Cmo-Chr4:18660831 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1219 . . . . . . . . Cmo04g02542 Cmo15g00629 . . . . Sed01g3642 . Cpe13g00665 Bhi04g01816 Tan11g1186 Cmetu03g0425 . Hepe02g2770 . Lcy10g1316 . . . . . . . . . Cone17ag0798 Cone20ag0397 . . . Cme03g00395 Blo17g00221 . . Bda13g01531 . Bpe14g00330 . Bma02g00280 . . . . . Car04g02340 Car15g00571 Cpe01g02102 . . . . . . . . . . . . . . . Lsi08g00525 . Chy03g00589 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007852 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g02542 Cmo_Chr04 FPKM 15.089297 17.385311 6.629191 7.98571 9.062665 11.394128 10.757599 7.013108 6.333674 7.046353