Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02549 ATGGATTATTCGCCGTTCTTCTCTGTTCATTTCTTCTTCTTCATCCTTTCCAGTTTCGCCCCTCTTTCCCTTTCTTTCTTGTCCAGTGAAAACTTTACCCTCTCCGGTGACGCCCATATCAGAAACAATGCCATTCTTCTCACTAAAGAACACAGCTGCCTTCCCTTTTCTTCGAATTCCCGTTCCGGGGTCGGAACCGCCTTCTACGTAAACCCTTTTCGCTTTCTTGATTTCTCCACCAATTCCACGGCTTCTTTCTCCTCTCGATTCTCCTTCTCCATTGTCCCCACCCCTTTTTGCCCTTTAGCCGATGGAATCGCCTTTCTCATCACCTCCGATACCAAATCTTTCAGCCGCTCTCTTGGGCACATGGGCCTTCCCGACCCGTCTCTTGATTCCCACCTTTCTTTCGTCGCTGTTGAATTCGACACCAATTTCCACCCTGATCTTGGTGACATTAATGACAACCATCTCGGTCTTGATCTCAACTCACCTACCTCTTTGACTTCTGTGGATTTTTGGTCAAGTGGCATTGTTTTGAAAAATGGCAGGAAGATTACTGCTTGGATTGAATACAGGGATGACATTAAGATGATCCAGGTCTGGGTTGGGTATTCCCAGACTCGACCCGCAAATCCTCTTCTGGTTGCGCAGATCGACCTTTCTAAGCAATTTAAGGAGTTTATGTATGTGGGATTCTCTGCTTCCAATGGGAAGGGCTCTGCTCTTTACATTGTTGATAGATGGCTATTTAGAACTTTTGGGTTGGTCCCTTCTTTGAGTCCTGTGGGTGCCATTAACGAAGGAGACTGTTTTATGTGCTCGTCGGAGGATTCAAGCACCAATAGCAGTCATGTCGTTGATGCTCGTAAGAGCAAGAACATTGGGGAGATGACCCTTGGATTGGGAGGTTTAGCTGCATTTGTTTGCTGCATTGTTGCAATTGTTGGTTATGTTTTGATAAAGAAGTTTAGAGGTAGAATGTCCAGAGTCAGAGCAGCCCATGTAACCTCTCATGTTCATATGAACAGAGTGCCAATGAGATTGTCTCTTCATGAGATAAAGTTGGCTACAATGGGGTTTAATCAAAACAGAGTTGTTGGGGAAGGTGGTTCTGCAACAGTATACAAGGGGTCTCTCTCATCCAGTGGAGAAGTAGCCGTTAAACGATTCGAGCGAAGCACGTCAAACAACCGCCAGTGCATTCCTTTCACCACAGAGTTCGCAACAATGGCGGGCGGCTTAAGTCACGAGAATTTGGTTCAACTTCATGGATGGTGCTGTGAGGCGAACGAGTTGATGCTTGTTTACGAGTACTTACCCAACGGAAGCCTCGCCGAACTTCTTCACAATAGCTCCTCCAATTCACAATTTGTTCTTCCTTGGAAGAACAGGTTGTCCATAGTTCTTGGGGTTGCTTCTGCATTGACATATCTTCATGAAGAATGTGAGAACCAAATCATTCATAGGGATGTCAAGACGTGCAACATTATGCTCGATGCAGAGTTCAACGCCAAATTAGTGGATTTTGGTCTAGCAGAAGTATACGAACACGGTTCGAAAACAAGAGAAGCAACCATACCAGCCGGAACGATGGGATACCTTGCACCCGAATATGTTTATTCCGGTGTTCCCACTGTCAAATCCGATGTTTACAGCTTCGGTGTGGTAATGCTCGAAGTTGCATCGGGACGGAGGGCTGTAGAAGAAGACGGGACGGTGCTCGTCAATTGGACTTGGGATCAATGGGAAGTGGGGAAACTGATTGAAGCGTCTGATTCAAGGTTGATGGGAGAGTACAATGTTGTAGAAATGGAAAGAATTCTAATGGTGGGACTTCTCTGTGTGCATCCAAATCATGAAAAGAGGCCAACTGCTAAAGAAGCTGCAAGGATCCTCAAAGGGGAAGCACCACTCCCTCTACTGCCATCAAGGAAACCAAGGGTCAACATCAAGCCTTTTTTTTCCTGA 1971 45.97 MDYSPFFSVHFFFFILSSFAPLSLSFLSSENFTLSGDAHIRNNAILLTKEHSCLPFSSNSRSGVGTAFYVNPFRFLDFSTNSTASFSSRFSFSIVPTPFCPLADGIAFLITSDTKSFSRSLGHMGLPDPSLDSHLSFVAVEFDTNFHPDLGDINDNHLGLDLNSPTSLTSVDFWSSGIVLKNGRKITAWIEYRDDIKMIQVWVGYSQTRPANPLLVAQIDLSKQFKEFMYVGFSASNGKGSALYIVDRWLFRTFGLVPSLSPVGAINEGDCFMCSSEDSSTNSSHVVDARKSKNIGEMTLGLGGLAAFVCCIVAIVGYVLIKKFRGRMSRVRAAHVTSHVHMNRVPMRLSLHEIKLATMGFNQNRVVGEGGSATVYKGSLSSSGEVAVKRFERSTSNNRQCIPFTTEFATMAGGLSHENLVQLHGWCCEANELMLVYEYLPNGSLAELLHNSSSNSQFVLPWKNRLSIVLGVASALTYLHEECENQIIHRDVKTCNIMLDAEFNAKLVDFGLAEVYEHGSKTREATIPAGTMGYLAPEYVYSGVPTVKSDVYSFGVVMLEVASGRRAVEEDGTVLVNWTWDQWEVGKLIEASDSRLMGEYNVVEMERILMVGLLCVHPNHEKRPTAKEAARILKGEAPLPLLPSRKPRVNIKPFFS 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18685790 18687913 - CmoCh04G025490.1 Cmo04g02549 381524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02549 656 ProSiteProfiles Protein kinase domain profile. 361 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g02549 656 Pfam Protein kinase domain 361 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g02549 656 SMART serkin_6 361 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g02549 656 SUPERFAMILY Concanavalin A-like lectins/glucanases 14 261 IPR013320 -
Cmo04g02549 656 PANTHER - 25 650 - -
Cmo04g02549 656 ProSitePatterns Protein kinases ATP-binding region signature. 367 389 IPR017441 GO:0005524
Cmo04g02549 656 SUPERFAMILY Protein kinase-like (PK-like) 339 633 IPR011009 -
Cmo04g02549 656 Gene3D - 14 257 - -
Cmo04g02549 656 CDD lectin_legume_LecRK_Arcelin_ConA 31 255 IPR001220 GO:0030246
Cmo04g02549 656 CDD STKc_IRAK 367 635 - -
Cmo04g02549 656 ProSitePatterns Legume lectins beta-chain signature. 138 144 IPR019825 -
Cmo04g02549 656 Pfam Legume lectin domain 25 253 IPR001220 GO:0030246
Cmo04g02549 656 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VIII.1 25 650 - -
Cmo04g02549 656 Gene3D Phosphorylase Kinase; domain 1 323 439 - -
Cmo04g02549 656 ProSitePatterns Serine/Threonine protein kinases active-site signature. 487 499 IPR008271 GO:0004672|GO:0006468
Cmo04g02549 656 Gene3D Transferase(Phosphotransferase) domain 1 440 638 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02549 Cmo-Chr4:18685790 Cmo16g01000 Cmo-Chr16:6893728 2.19E-149 dispersed
Cmo04g02549 Cmo-Chr4:18685790 Cmo14g00192 Cmo-Chr14:869864 2.10E-136 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74313 PF00069 Pkinase 3.30E-44 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02549 - - cmax:111486861 1212.98