Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02550 ATGGAAACCAGACTCTCCGCCGCTCTTGGCCTTCCGCCGCCGGATCCGGTTTGTTATCCTTCTCTTTTCGAATTCCCCACTCTTTTCTCCAACTTTGATTCATTACTCGCCGGTAATAAAGTCCCCAAGGATCGGAATCACTTCCAGTGTCCTCCTCTTCCGTTTTCTTCATTGTCCTTATCCACCGAACAGCAGGTTTTCACCCCCAAATCCTCTAACTGTCTGAAACCTCCCTCTAAAAACTCCCCCAAAATTCAATCCCTTATCAAGAACTTATCCGTTCTCGAACGGGCAGTCGTCGGCGCCGCGGGTGGTGCCATGGCTGGTGCCTTCACTTACGTGTGTCTACTTCCGCTCGATACCATCAAAACCAGGCTGCAGGCAAAAGGGGCTTCGGAGATTTACAAGGGTACATTCGATGCCATTGTTAAGACCTTCCAATCCAGGGGGATTCTAGGGTTTTACAGGGGCGTTTCTGCTGTAATTGTTGGCTCTGCAGCTTCTTCAGCCGTTTATTTTGGAACATGCGAGTTTGGTAAGTCGATTCTGTCGAAATTTGATTGCCCTTCTCTGCTTATTCCTCCAACTGCTGGGGCTATGGGGAATATTATCTCCTCGGCTATAATGGTGCCGAAGGAGTTAATTACTCAGAGAATGCAGGTTGGGGTTAAAGGGAGGTCTTGGGAGGTTTTGATTCAGATTCTTGAGAAAGATGGTATAATGGGGCTTTATGCTGGTTATTTTGCAACGTTGTTAAGGAATTTACCTGCTGGGGTTTTGAGTTACTCTTCATTTGAGTATTTGAAAGCTGCTGTTCTTAGCGAAACGAAGAGTAACAATCTTGAACCGCTTCAGAGTGTTTGTTGTGGAGCATTGGCCGGTGCTATATCGGCCACTCTTACAACACCTCTTGATGTTGTCAAGACAAGGTTGATGACTCAAGTTCATGGGGAGGCTGCAAATATGTACAGTGGGGTGTCGGCTACGATCAAGCAAATATTGCAGGAAGAGGGGTGGATTGGATTAACCCGTGGAATGGGTCCTAGAGTTCTTCACAGTGCTTGCTTTGCAGCTATCGGTTACTTCGCTTTCGAGACGGCAAAACTTGCAATTTTGCATCGATATCTTATGCAGAAGGAGGCTTCAGAATTATATGAACTTTTGAAGCCCTTCAGAAGAGTTGAGACCACTAAGAAAACTTCGAATCGACTTCTCGAAGGCAGCTGCGTGAGGAAGCTGATGAATTGA 1248 46.55 METRLSAALGLPPPDPVCYPSLFEFPTLFSNFDSLLAGNKVPKDRNHFQCPPLPFSSLSLSTEQQVFTPKSSNCLKPPSKNSPKIQSLIKNLSVLERAVVGAAGGAMAGAFTYVCLLPLDTIKTRLQAKGASEIYKGTFDAIVKTFQSRGILGFYRGVSAVIVGSAASSAVYFGTCEFGKSILSKFDCPSLLIPPTAGAMGNIISSAIMVPKELITQRMQVGVKGRSWEVLIQILEKDGIMGLYAGYFATLLRNLPAGVLSYSSFEYLKAAVLSETKSNNLEPLQSVCCGALAGAISATLTTPLDVVKTRLMTQVHGEAANMYSGVSATIKQILQEEGWIGLTRGMGPRVLHSACFAAIGYFAFETAKLAILHRYLMQKEASELYELLKPFRRVETTKKTSNRLLEGSCVRKLMN 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18688147 18690107 - CmoCh04G025500.1 Cmo04g02550 381525

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02550 415 Gene3D Mitochondrial carrier domain 225 388 IPR023395 -
Cmo04g02550 415 ProSiteProfiles Solute carrier (Solcar) repeat profile. 189 271 IPR018108 -
Cmo04g02550 415 ProSiteProfiles Solute carrier (Solcar) repeat profile. 96 182 IPR018108 -
Cmo04g02550 415 SUPERFAMILY Mitochondrial carrier 99 365 IPR023395 -
Cmo04g02550 415 PANTHER PROTEIN MITOFERRINLIKE 1, CHLOROPLASTIC 20 381 - -
Cmo04g02550 415 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 20 381 - -
Cmo04g02550 415 ProSiteProfiles Solute carrier (Solcar) repeat profile. 281 370 IPR018108 -
Cmo04g02550 415 Gene3D Mitochondrial carrier domain 54 224 IPR023395 -
Cmo04g02550 415 Pfam Mitochondrial carrier protein 102 185 IPR018108 -
Cmo04g02550 415 Pfam Mitochondrial carrier protein 281 371 IPR018108 -
Cmo04g02550 415 Pfam Mitochondrial carrier protein 196 272 IPR018108 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02550 K15111 SLC25A26; solute carrier family 25 (mitochondrial S-adenosylmethionine transporter), member 26 - csv:116404632 657.136
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01486 Cmo-Chr2:8702845 Cmo04g02550 Cmo-Chr4:18688147 2.23E-37 dispersed
Cmo04g02550 Cmo-Chr4:18688147 Cmo10g00320 Cmo-Chr10:1435554 1.81E-06 dispersed
Cmo04g02550 Cmo-Chr4:18688147 Cmo04g02578 Cmo-Chr4:18860081 3.35E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1243 . . . . . . . . Cmo04g02550 . . . . . Sed11g1334 . . Bhi04g01803 Tan11g1171 Cmetu03g1357 . Hepe02g2779 . Lcy10g1329 Cla08g00676 Cam08g1106 Cec08g0691 Cco08g0800 Clacu08g0812 . Cre08g0616 . . Cone17ag0795 Cone20ag0392 . . . Cme03g01094 Blo17g00218 Blo18g00217 . Bda13g01526 Bpe02g01604 Bpe14g00335 Bma01g00866 Bma02g00276 . . . . . Car04g02347 . Cpe01g02106 . . . . . . . . . . . . . . . Lsi08g00608 . Chy03g00543 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006009 3 1 2 2 2 1 1 1 1 2 1 1 0 1 1 1 1 2 1 1 2 1 1 1 1 1 1 2 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g02550 Cmo_Chr04 FPKM 0.669022 0.0 0.983696 1.654872 1.496406 1.416315 0.766019 0.80875 1.024654 1.429175