Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02557 ATGGATTTCGTTGAAGGTGTTGGAGAGAGTTCTTCGCCGCCTCGAAGCTTCGGTGCCTTCTGTGGTGTCCACGATATTCGGAACGATGTTTATACTCGGTTGGTTGAGAGTGGACATGAGGAGGCCGCTTCTAATCCACTGTTTCGTGAGAACTTGGATGCACACTTCAATCGCTTGCCTCCAAGTTATGGACTTGATGTTAACATGGAAAAGGTGGAAGATGTTGTGTTACATCAAAATCTTCTTTCTCTAGCAAAGGATCCAGAGAAGTGCCCTGTTTACCACATTCGCTTTCTCGAGGTCGAACTTCCTAATATCAGAGAAAAAAAACTGAGGATGGCACATTGCGACGGACTGCATCAAATTGCCATCGGTGGCACCTGGAGGCACATATGTACTAAAACAGATGGCAATGACGATGAAGAACTTGATAGTATTCTTCTAAGTGGTTCATCTAATGAGGCAGCTGATAAAAGTTTTCCAGTGTCACACAAGAGAATAAGGGGCAATATACTTGACTTTGAGCCTTGTTCCAAGCTTGAGGACTTAAAACTGGATGTTAGAAAGAACTCAAAGGCCATGGATGGGAGATATCATATGGAAAGTTTTTCTAAAAGGCAGGGTATTTCACACGTACCGGTACATGAAGTGATATTTTCAACTGTTGACAAGCCTAAGCTTCTTAGCCAGCTGTCTGCTTTGCTTTCTGATATAGGACTTAACATTCGAGAAGCACATGTGTTTTCAACATCTGATGGTTACTCCTTGGATGTATTTGTGGTGGATGGATGGCCTGCTGAGGAAACTGATGGCTTGTACGAAGCTATGGAAAAAGCAGTTGCTAGATATGAGGGGTCGTGGTCTGGTTCTTCACACTCTCATTCAGCAGTCAAGAAAGCATTAGACGCCCAGACAAAATCAGCAGATTGGGAAATAGATAGACGGTTGCTGAAGATTGGCGAAAAAATTGCAACTGGATCTTGTGGTGATTTGTATCATGGACTATATCTTGGTCAAGATGTAGCTGTCAAGATATTAAGATCAGAAGATCTAAATGCTGATTTAGAGGATGAATTCAATCAAGAAGTGGCAATTCTCAGGAAGGTCCAGCATAAAAATGTAGTTCGTTTTATAGGTGCATCTACAAACTCTCCACATTTGTGTATAGTAACAGAGTATATGCCTGGAGGGAGTCTTTATGAGTACTTGCACAAGAATCATTGCATGTTACAGCTGTCGCAACTGCTGAAGTTTGCTATTGATGTTTGTGAAGGAATGGCATACTTACATTTAAATAACATTATTCATAGAGATTTGAAGACAGCAAATCTGCTAATGAACACTGAACATGTTGTAAAGGTGGCAGATTTTGGTGTCGCGCGATTCCAGAGCCAAGGAGTCATGACAGCGGAAACTGGAACATATAGATGGATGGCGCCTGAGGTAATAAATCATCTGCCGTATGATCAGAAAGCAGATGTTTTCAGTTTTGCGATTGTGCTGTGGGAACTAGTTACAGCAAAGGTTCCTTATGATTCCATGACACCGCTACAAGCTGCCCTAGGAGTAAGACAGGGACTACGCCCGGATCTTCCCGAAAATGTGCACCCTAAAGTATTGGATTTGATGCAAAGATGCTGGGATGCAGATCCGGTCAATCGGCCTCCATTTACTGAGATAAAAGTTGAACTTCAAAATCTCCTGGAAGAAGTTCAGATGTGTACAAAATATGAAGAAAATCATGCGGCGGTTAATGGGAGCTGA 1764 42.35 MDFVEGVGESSSPPRSFGAFCGVHDIRNDVYTRLVESGHEEAASNPLFRENLDAHFNRLPPSYGLDVNMEKVEDVVLHQNLLSLAKDPEKCPVYHIRFLEVELPNIREKKLRMAHCDGLHQIAIGGTWRHICTKTDGNDDEELDSILLSGSSNEAADKSFPVSHKRIRGNILDFEPCSKLEDLKLDVRKNSKAMDGRYHMESFSKRQGISHVPVHEVIFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTSDGYSLDVFVVDGWPAEETDGLYEAMEKAVARYEGSWSGSSHSHSAVKKALDAQTKSADWEIDRRLLKIGEKIATGSCGDLYHGLYLGQDVAVKILRSEDLNADLEDEFNQEVAILRKVQHKNVVRFIGASTNSPHLCIVTEYMPGGSLYEYLHKNHCMLQLSQLLKFAIDVCEGMAYLHLNNIIHRDLKTANLLMNTEHVVKVADFGVARFQSQGVMTAETGTYRWMAPEVINHLPYDQKADVFSFAIVLWELVTAKVPYDSMTPLQAALGVRQGLRPDLPENVHPKVLDLMQRCWDADPVNRPPFTEIKVELQNLLEEVQMCTKYEENHAAVNGS 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18735020 18748470 - CmoCh04G025570.1 Cmo04g02557 381532

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02557 587 Pfam Protein tyrosine and serine/threonine kinase 317 563 IPR001245 GO:0004672|GO:0006468
Cmo04g02557 587 ProSitePatterns Serine/Threonine protein kinases active-site signature. 434 446 IPR008271 GO:0004672|GO:0006468
Cmo04g02557 587 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 155 576 - -
Cmo04g02557 587 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 10 108 - -
Cmo04g02557 587 CDD STKc_MAP3K-like 323 560 - -
Cmo04g02557 587 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 10 108 - -
Cmo04g02557 587 SUPERFAMILY Protein kinase-like (PK-like) 305 568 IPR011009 -
Cmo04g02557 587 ProSiteProfiles ACT domain profile. 216 290 IPR002912 -
Cmo04g02557 587 Gene3D Phosphorylase Kinase; domain 1 302 394 - -
Cmo04g02557 587 PRINTS Tyrosine kinase catalytic domain signature 473 483 IPR001245 GO:0004672|GO:0006468
Cmo04g02557 587 PRINTS Tyrosine kinase catalytic domain signature 428 446 IPR001245 GO:0004672|GO:0006468
Cmo04g02557 587 PRINTS Tyrosine kinase catalytic domain signature 391 404 IPR001245 GO:0004672|GO:0006468
Cmo04g02557 587 PRINTS Tyrosine kinase catalytic domain signature 492 514 IPR001245 GO:0004672|GO:0006468
Cmo04g02557 587 PRINTS Tyrosine kinase catalytic domain signature 535 557 IPR001245 GO:0004672|GO:0006468
Cmo04g02557 587 Gene3D Transferase(Phosphotransferase) domain 1 395 585 - -
Cmo04g02557 587 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 155 576 - -
Cmo04g02557 587 ProSiteProfiles Protein kinase domain profile. 317 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g02557 587 SUPERFAMILY ACT-like 215 286 IPR045865 -
Cmo04g02557 587 SMART serkin_6 317 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02557 - - - mcha:111011813 1009.21
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g02557 Cmo15g00611 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02557 Cmo-Chr4:18735020 Cmo19g00771 Cmo-Chr19:7783849 3.06E-166 dispersed
Cmo15g00611 Cmo-Chr15:2962529 Cmo04g02557 Cmo-Chr4:18735020 1.10E-156 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g154 Blo01g01614 . . . Bpe02g00332 . . Bma01g02388 Cmo04g02557 . Cma01g01992 . Car01g01564 . . . . . . . . . . . . . . . . . . . Cone7ag1915 Cone17ag0791 Cone20ag0386 Lsi04g01782 . Chy04g00388 . . . . . . . . . . . . . . Car04g02350 Car15g00559 Cpe01g02111 Cpe02g00053 . . . . . . . Cla05g01594 . . . . . . Lsi08g00545 . . .
Vvi18g1256 . . . . . . . . Cmo04g02557 Cmo15g00611 . . . . . . Cpe13g00675 Bhi04g01791 . . . . . Lcy10g1341 Cla08g00702 . . . . . . . . Cone17ag0791 Cone20ag0386 . . . Cme03g00342 . Blo18g00215 . Bda13g01522 Bpe02g01606 . Bma01g00863 Bma02g00273 . . . . . Car05g00693 Car15g00559 Cpe01g02111 . . . . . . . . . . . . . . . Lsi08g00545 . Chy03g00525 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004128 3 1 1 5 1 1 3 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 2 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74314 PF07714 PK_Tyr_Ser-Thr 2.30E-70 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g02557 Cmo_Chr04 FPKM 2.843326 3.328899 3.770277 3.484548 13.411408 14.490438 14.683876 6.980934 5.782647 6.009584