Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02558 ATGGTTGGCAGCGCGATGGGGATGAGTGAGAAGAACGGTGAGGCTGAGATTTTGATCGTAGATTTGGATCCCAATGGTGTTTTTTTGGAGTCTCTAAGCAACGGCGTGGATCTCGATGGAGAACATGATGCGGAATTGAAACAGAATGGGAAGAGGGAGATTGTGCTCGGTAGAAATGTCCACACTACTTGTTTCACCATCACCGAGCCAGATGCCAATGATGAATCCACTGGTGACAAGGATGCTTACATGGCTAGTGTGTTGGCTCGCTATAGAAAGAATCTCGTCGAGAGGACTAAGCATCATTTAGGTTACCCTTATAATTTGGACTTCGATTACGGTGCTCTGGGTCAGTTGCAGCATTTCTCGATTAACAATCTCGGCGATCCGTTCATTGAAAGCAATTACGGTGTGCACTCGAGGCAGTTCGAGGTTGGGGTTTTGGATTGGTTTGCTCGTCTTTGGGAGATTGAGAAAAACGACTATTGGGGTTACATTACAAATTGTGGCACCGAAGGCAACCTTCATGGGATTCTCGTCGGGAGAGAAGTTTTGCCAGATGGGATTCTATATGCTTCTCAGGAATCTCATTATTCCGTTTTTAAAGCGGCTAGAATGTATAGAATGGACTGTGTGAAGGTTGGAACTCTGATATCTGGTGAGATCGATTGTGCTGACCTTAAACTCAAGTTGCTTGCTAACAAAGACAAGCCAGCTATACTCAATGTCAATATTGGTAAATTCTCTTTCCTTTTATTCATGTTTGCAACTAGAAAGGGGATCATATTCGTTTTATTGGTGGGAATTGAGGGAATTCTTGTTACAGGAACCACTGTGAAAGGAGCCGTGGATGATCTCGATCTTGTGATATCAACACTCAACGAATGTGGATTCTCGAATGATCGGTTCTATATTCATTGTGATGGGGCATTGTTTGGACTTATGATGCCTTTTGTCAAACGTGCACCAAAGGTCTCGTTTAAGAAGCCCATTGGAAGTGTTAGTGTTTCTGGTCATAAGTTCATTGGATGTCCAATGCCTTGTGGTGTTCAACTTACAAGGTTGGAGCATATAAATGCCCTCTCAAGGAATGTTGAGTATCTAGCCTCAAGGGATGCCACAATCATGGGAAGCCGGAATGGCCATGCTCCTATCTTCCTTTGGTATACCCTCAACAGAAAAGGCTACACAGGATTTCAAAAGGAAGTTCAGAAGTGTCTCAGAAATGCACACTACCTGAAAGGCCGGCTTCTTGACGCAGGAATTAGCGCAATGCTGAATGAACTTAGCAGCACCGTCGTGTTTGAACGACCTCGAGATGAAGAGTTTGTTCGTAGGTGGCAGCTTGCATGCGAAGGAAATATTGCTCATGTTGTGGTAATGCCCAATGTTATCCAAGAGAAGCTGGATGATTTCATAGCAGAATTGACCGAAAAACGCTCAACCTGGTATGCTGAAGACAAAGATCAACCTCCTTGCCTCGCAGCAGAGTTGGGGAAGGAAAACTGTGCTTGTAAGTTGCACAGGACTTGA 1533 44.42 MVGSAMGMSEKNGEAEILIVDLDPNGVFLESLSNGVDLDGEHDAELKQNGKREIVLGRNVHTTCFTITEPDANDESTGDKDAYMASVLARYRKNLVERTKHHLGYPYNLDFDYGALGQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWEIEKNDYWGYITNCGTEGNLHGILVGREVLPDGILYASQESHYSVFKAARMYRMDCVKVGTLISGEIDCADLKLKLLANKDKPAILNVNIGKFSFLLFMFATRKGIIFVLLVGIEGILVTGTTVKGAVDDLDLVISTLNECGFSNDRFYIHCDGALFGLMMPFVKRAPKVSFKKPIGSVSVSGHKFIGCPMPCGVQLTRLEHINALSRNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYTGFQKEVQKCLRNAHYLKGRLLDAGISAMLNELSSTVVFERPRDEEFVRRWQLACEGNIAHVVVMPNVIQEKLDDFIAELTEKRSTWYAEDKDQPPCLAAELGKENCACKLHRT 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18750637 18754714 + CmoCh04G025580.1 Cmo04g02558 381533

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02558 510 PANTHER SERINE DECARBOXYLASE 275 509 - -
Cmo04g02558 510 PANTHER SERINE DECARBOXYLASE 10 247 - -
Cmo04g02558 510 SUPERFAMILY PLP-dependent transferases 90 478 IPR015424 -
Cmo04g02558 510 Gene3D - 118 391 IPR015421 GO:0003824
Cmo04g02558 510 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 333 354 IPR021115 GO:0016831
Cmo04g02558 510 Gene3D Aspartate Aminotransferase, domain 1 392 481 IPR015422 GO:0003824
Cmo04g02558 510 Pfam Pyridoxal-dependent decarboxylase conserved domain 275 430 IPR002129 GO:0016830|GO:0019752|GO:0030170
Cmo04g02558 510 PANTHER - 275 509 - -
Cmo04g02558 510 PANTHER - 10 247 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02558 K25193 SDC; serine decarboxylase [EC:4.1.1.-] - csv:116404591 841.262
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02558 Cmo-Chr4:18750637 Cmo15g00908 Cmo-Chr15:4596553 1.86E-08 dispersed
Cmo15g00608 Cmo-Chr15:2953267 Cmo04g02558 Cmo-Chr4:18750637 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g106 Blo01g01631 . . Bda03g00315 Bpe02g00313 Bpe04g00277 Bma04g00284 Bma01g02405 Cmo04g02558 . Cma01g02009 Cma09g00061 . . . . . . . . . . . . . . . . . . . Cone4ag2014 Cone7ag1930 . . Lsi04g01800 Csa04g02694 . . . . . . . . . . . . . . . . . . Cpe02g00040 . . . . . . . . . . . . . . . . Chy07g00385 Cme07g00062
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004732 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 3 1 1 2 1 1 1 3 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g02558 Cmo_Chr04 FPKM 9.138476 10.307897 13.586459 13.310939 10.79526 9.792913 10.181261 13.951661 14.743561 14.363723