Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02560 ATGATGGATTTGAACTTCACCGCCCGGAAACCGCCGCAGACGGCGACGAGGATGGACATAGAACAGATGCCGGAGACTCCACACCGTGGCTATCACCATCGCCGTTCTCACTCCGATACATCTTTCCGCTTTGCTAATTTCGACGATCTTCTCCTCTTCGATCATCCCGACCACGATTTATCATCTTCCCTTCGTTCTCCCTCGCCGTCGCCGTCTCCGACGCCGGTGGGCGCTCGTATGGCTCTCGATTCCTTCAATTCAAAGTCCCCTGACGACGCCTCTGCCTCGAAACCTAAAGCTAGTAACGATACCTCGGCTTCAGACTTCTTTGGTGCTCACTGCCGGAGTTTGTCGATGGATTCAGACTTCTTCGACGGCTTAGGGATAGCCGGAGACGGCAGCGACGGTGAGGTACTTGGCGGGAGGGTAACGGTCGGGGAGAAGAAGATCGGTCGCCATAGACATAGCAATTCCATGGATGGCGCTTTGACCTCGTCGTTTGAAGCGGAATCCACCGGCGTAATTGATTGCTCCAGGAAGGCCATGGCACCTGATAAACTCGCTGAGCTTGCTTTGATGGACCCTAAAAGAGCTAAGAGGATCCTGGCGAACAGACAATCTGCTGCACGATCCAAGGAGAGGAAAATACGTTACACAAACGAATTAGAGAAGAAGGTGCAGATGCTTCAATCAGAAGCGACTTCCCTTTCTGCACAGGTCACTGTATTACAGCTTAAGGGGAAAGGGGATCAGAACAATAATCTTTTATCTGTTCTTACTTTACAAGTCTCACGGGTGGGCTGTAGCTATCAACTGGACTTGTTAATTTGTTGTGCTGATGGAGGAACTGGTGATCTTGACTTTTCAAGAACTGTTGAACAGATAATCAGGCTTTATAATTTGTGGGTTTCTTGA 915 50.05 MMDLNFTARKPPQTATRMDIEQMPETPHRGYHHRRSHSDTSFRFANFDDLLLFDHPDHDLSSSLRSPSPSPSPTPVGARMALDSFNSKSPDDASASKPKASNDTSASDFFGAHCRSLSMDSDFFDGLGIAGDGSDGEVLGGRVTVGEKKIGRHRHSNSMDGALTSSFEAESTGVIDCSRKAMAPDKLAELALMDPKRAKRILANRQSAARSKERKIRYTNELEKKVQMLQSEATSLSAQVTVLQLKGKGDQNNNLLSVLTLQVSRVGCSYQLDLLICCADGGTGDLDFSRTVEQIIRLYNLWVS 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18755359 18756653 - CmoCh04G025600.1 Cmo04g02560 381535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02560 304 MobiDBLite consensus disorder prediction 1 35 - -
Cmo04g02560 304 PANTHER BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN-RELATED 7 262 - -
Cmo04g02560 304 MobiDBLite consensus disorder prediction 87 105 - -
Cmo04g02560 304 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 194 244 IPR004827 GO:0003700|GO:0006355
Cmo04g02560 304 SMART brlzneu 192 261 IPR004827 GO:0003700|GO:0006355
Cmo04g02560 304 MobiDBLite consensus disorder prediction 59 105 - -
Cmo04g02560 304 Pfam bZIP transcription factor 196 241 IPR004827 GO:0003700|GO:0006355
Cmo04g02560 304 Coils Coil 219 239 - -
Cmo04g02560 304 Gene3D - 195 247 - -
Cmo04g02560 304 CDD bZIP_plant_RF2 197 244 IPR044759 GO:0003700|GO:0006355
Cmo04g02560 304 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 7 262 - -
Cmo04g02560 304 SUPERFAMILY Leucine zipper domain 196 244 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02560 Cmo-Chr4:18755359 Cmo09g01090 Cmo-Chr9:6006833 1.14E-70 dispersed
Cmo04g02560 Cmo-Chr4:18755359 Cmo01g01038 Cmo-Chr1:8193096 1.58E-81 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9717 PF00170 bZIP_1 8.70E-08 CL0018 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02560 K20557 - csv:101215277 291.967