Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo04g02560 | ATGATGGATTTGAACTTCACCGCCCGGAAACCGCCGCAGACGGCGACGAGGATGGACATAGAACAGATGCCGGAGACTCCACACCGTGGCTATCACCATCGCCGTTCTCACTCCGATACATCTTTCCGCTTTGCTAATTTCGACGATCTTCTCCTCTTCGATCATCCCGACCACGATTTATCATCTTCCCTTCGTTCTCCCTCGCCGTCGCCGTCTCCGACGCCGGTGGGCGCTCGTATGGCTCTCGATTCCTTCAATTCAAAGTCCCCTGACGACGCCTCTGCCTCGAAACCTAAAGCTAGTAACGATACCTCGGCTTCAGACTTCTTTGGTGCTCACTGCCGGAGTTTGTCGATGGATTCAGACTTCTTCGACGGCTTAGGGATAGCCGGAGACGGCAGCGACGGTGAGGTACTTGGCGGGAGGGTAACGGTCGGGGAGAAGAAGATCGGTCGCCATAGACATAGCAATTCCATGGATGGCGCTTTGACCTCGTCGTTTGAAGCGGAATCCACCGGCGTAATTGATTGCTCCAGGAAGGCCATGGCACCTGATAAACTCGCTGAGCTTGCTTTGATGGACCCTAAAAGAGCTAAGAGGATCCTGGCGAACAGACAATCTGCTGCACGATCCAAGGAGAGGAAAATACGTTACACAAACGAATTAGAGAAGAAGGTGCAGATGCTTCAATCAGAAGCGACTTCCCTTTCTGCACAGGTCACTGTATTACAGCTTAAGGGGAAAGGGGATCAGAACAATAATCTTTTATCTGTTCTTACTTTACAAGTCTCACGGGTGGGCTGTAGCTATCAACTGGACTTGTTAATTTGTTGTGCTGATGGAGGAACTGGTGATCTTGACTTTTCAAGAACTGTTGAACAGATAATCAGGCTTTATAATTTGTGGGTTTCTTGA | 915 | 50.05 | MMDLNFTARKPPQTATRMDIEQMPETPHRGYHHRRSHSDTSFRFANFDDLLLFDHPDHDLSSSLRSPSPSPSPTPVGARMALDSFNSKSPDDASASKPKASNDTSASDFFGAHCRSLSMDSDFFDGLGIAGDGSDGEVLGGRVTVGEKKIGRHRHSNSMDGALTSSFEAESTGVIDCSRKAMAPDKLAELALMDPKRAKRILANRQSAARSKERKIRYTNELEKKVQMLQSEATSLSAQVTVLQLKGKGDQNNNLLSVLTLQVSRVGCSYQLDLLICCADGGTGDLDFSRTVEQIIRLYNLWVS | 304 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 18755359 | 18756653 | - | CmoCh04G025600.1 | Cmo04g02560 | 381535 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo04g02560 | 304 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
Cmo04g02560 | 304 | PANTHER | BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN-RELATED | 7 | 262 | - | - | |
Cmo04g02560 | 304 | MobiDBLite | consensus disorder prediction | 87 | 105 | - | - | |
Cmo04g02560 | 304 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 194 | 244 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo04g02560 | 304 | SMART | brlzneu | 192 | 261 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo04g02560 | 304 | MobiDBLite | consensus disorder prediction | 59 | 105 | - | - | |
Cmo04g02560 | 304 | Pfam | bZIP transcription factor | 196 | 241 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo04g02560 | 304 | Coils | Coil | 219 | 239 | - | - | |
Cmo04g02560 | 304 | Gene3D | - | 195 | 247 | - | - | |
Cmo04g02560 | 304 | CDD | bZIP_plant_RF2 | 197 | 244 | IPR044759 | GO:0003700|GO:0006355 | |
Cmo04g02560 | 304 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 7 | 262 | - | - | |
Cmo04g02560 | 304 | SUPERFAMILY | Leucine zipper domain | 196 | 244 | IPR046347 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g02560 | Cmo-Chr4:18755359 | Cmo09g01090 | Cmo-Chr9:6006833 | 1.14E-70 | dispersed | |
Cmo04g02560 | Cmo-Chr4:18755359 | Cmo01g01038 | Cmo-Chr1:8193096 | 1.58E-81 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9717 | PF00170 | bZIP_1 | 8.70E-08 | CL0018 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo04g02560 | K20557 | - | csv:101215277 | 291.967 |