Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02564 ATGAGGAGCTTGGTTAGCTATGCAGAAGCAATGGAGGTCCACAAGCCATACATTGCTATGCTGTTCGTTCAGTGTGTGTACTCAGGAATGGCTTTGTTCTCAAAGGCAGCCATTTCTCAAGGCATGAACCCACCCATCTTCGTCTTCTACCGCCAAGCGTTCGCTACCATCGCCATGGCTCCGTTCGCCTTCTTCTTCGAAAGAAAGAAGGCTGTTCCTTTATCCTTCAAGTTTCTCTTCAAAGTGTTCTTGATTTCTCTAAGTGGAATCACCTTGAGTTTAAACCTTTATTACATAGCTATCAACCACATATCAGCAACATTCGCAGCCGCTACAACCAACACGATCCCCGCTATTACACTCCTCTTTGCTCTCCTCTTCAGATATGAAGTGATTTCGGTGAGAAAGATGGAAGGGATAGCGAAATTGGTTGGGGGTGTGATAGGTTTTTCTGGGGCTTTGGTGTATGCTTTTGTGAAGGGTCCAGTGATGAAGTTCATGAATTGGTACCCACAAAACGCTCGTAATTCATTCGAAGGGTACTCGGGTTCGGAATGGATTAAGGGTTCATTTGTGATGCTTTCAGCCAATATTGCTTGGTCTTTGTGGCTTGTTTTGCAGGCCTCAATTGTGAAGGAATATCCAGCAAAGTTGAGGATTACAAGCCTGCAGTGCTTCTTCAGCTTGATACAATCAGGTTTGTGGGCTGTGGCGATGGAGAGAAAGGCTGATGCTTGGAAGCTTGGATGGAATCTTCAACTCTTCTCGGTTGCCTATTGCGGTGTGATCGTGACGGGAATGACGTATTGGCTACAAATATGGACAGTAGAGAAGAAAGGACCAGTGTTCACAGCCATGTTTACACCATTAGCACTAATCATAACAGCAATCTTCTCAGCATTAGTATGGAAGGAAGCCCTTCATTGGGGAAGTGTTGGTGGTGCTATATTGCTGGTGGTGGGGCTTTATTGTGTTCTATGGGGGAAGAACAAAGAAGAAGATATCAAAAGTGAAGCAATTGAACAAAGAGTTGATATCAAAGAGGAAACCAATTCAGCCTCCATTTGCTAA 1071 44.54 MRSLVSYAEAMEVHKPYIAMLFVQCVYSGMALFSKAAISQGMNPPIFVFYRQAFATIAMAPFAFFFERKKAVPLSFKFLFKVFLISLSGITLSLNLYYIAINHISATFAAATTNTIPAITLLFALLFRYEVISVRKMEGIAKLVGGVIGFSGALVYAFVKGPVMKFMNWYPQNARNSFEGYSGSEWIKGSFVMLSANIAWSLWLVLQASIVKEYPAKLRITSLQCFFSLIQSGLWAVAMERKADAWKLGWNLQLFSVAYCGVIVTGMTYWLQIWTVEKKGPVFTAMFTPLALIITAIFSALVWKEALHWGSVGGAILLVVGLYCVLWGKNKEEDIKSEAIEQRVDIKEETNSASIC 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18779783 18782387 + CmoCh04G025640.1 Cmo04g02564 381539

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02564 356 Pfam EamA-like transporter family 188 326 IPR000620 GO:0016020|GO:0016021
Cmo04g02564 356 Pfam EamA-like transporter family 15 149 IPR000620 GO:0016020|GO:0016021
Cmo04g02564 356 SUPERFAMILY Multidrug resistance efflux transporter EmrE 50 150 - -
Cmo04g02564 356 SUPERFAMILY Multidrug resistance efflux transporter EmrE 225 331 - -
Cmo04g02564 356 PANTHER WAT1-RELATED PROTEIN 13 340 IPR030184 GO:0016021|GO:0022857
Cmo04g02564 356 PANTHER WAT1-RELATED PROTEIN 13 340 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02564 - - - cmos:111463975 699.508
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02564 Cmo-Chr4:18779783 Cmo20g01088 Cmo-Chr20:10336094 4.25E-102 dispersed
Cmo12g00832 Cmo-Chr12:7616341 Cmo04g02564 Cmo-Chr4:18779783 1.34E-71 dispersed
Cmo04g02564 Cmo-Chr4:18779783 Cmo07g00804 Cmo-Chr7:3703448 8.13E-95 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1380 . . . . . . . . Cmo04g02564 . . . . . . . . Bhi04g01775 . . . Hepe02g2137 . Lcy10g1352 Cla08g00712 Cam08g1139 Cec08g0728 Cco08g0836 Clacu08g0847 . Cre08g0648 . . Cone17ag0785 Cone20ag0379 . . . Cme03g00317 . . . Bda13g01413 . . Bma01g00742 . . . . . . Car04g02357 . Cpe01g02117 . . . . . . . . . . . . . . . Lsi08g00554 . Chy03g00510 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000096 8 10 5 6 7 6 9 8 6 9 4 7 7 13 9 7 7 3 5 7 10 11 6 9 16 8 10 19 10 2 244
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g02564 Cmo_Chr04 FPKM 0.0 0.0 1.377143 1.313892 0.0 0.0 1.700038 1.837322 0.0 2.030917