Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02565 ATGTCATTCCGCAGCATACTTCGTGATGTGAGGGATGGATTTGGAAGCTTATCTCGACGCAGTTTTGAACTCAGGCTGTCTAGCCATTCCAGAGGTAAATCTCATGGACCAGTTCATGAGTTTGATGATGAACCTCTGCTAATCCAAACTAGCCGCTGGGCTAGCCTTCCGCCCGAGTTATTATTGGATGTGGTTCGGAGACTAGAGGCAAGCGAGAATACTTGGCCTTCTCGGAGAAATGTTGTTGCTTGTGCTGCTGTATGTAGGTCATGGAGGGACGTGTGCAAAGAAATCGTCAAAAGTCCCGAGTTCTCCGGGAAAATTACATTCCCCATCGCCTTGAAGCAGCCCGGACCTCGTGATGGTACTATTCAATGCTTCATCAAGAGGAACAAATCTAATTTAACCTATCATCTTTATCTTTGCCTTAGTCCTACTTTACTTGTTGAGAACGGGAAATTTCTTCTTTCTGCAAAAAGAATGAGGAGAACTACTTCGACCGAGTATGTTATATCATTGGCTGCAGACGATATATCGAGATCGAGCAATGGTTATATCGGAAAGCTAAGATCAAATTTTCTGGGAACAAAGTTCATTATATATGATACACAGATTCCTTACAACGGCAACCAAATTCCGACCCTTGGCCGAAGCCGGAGATTCTACTCCAAAAAGGTCTCTCCAAAGGTACCGGCGGGTAGCTACAGCATAGCACAAATTGCATATGAGTTGAACGTATTAGGTACAAGGGGACCCCGGAGGATGCACTGCACTATGTACTCGATCCCGACTTCATCTCTTGAGCCAGATTCCTCCGTTCCAGGACAACCGGAACTCAATCCTCGCCCCCTCAAAGACTCATTTCGAAGCATTTCATTCTCCAAGTCGATCGATCATTCAACTGAGTTCAGCAGTTCCCGCTTCTCCGATGTTGCAGGAGTGCTTGCTGATGAAGATGGCGATAGGAAGGACATAGACATACCCTTGATTCTCCGAAACAAGGCACCAAGATGGCACGAGCAGTTGCAGTGTTGGTGTCTCAACTTCCGGGGGAGGGTGACGGTTGCATCTGTAAAGAATTTTCAGCTGATCGCCGCAACGTCGCCTGCTGCAGAAGTGTCGGTACCGTCACAGCCACCTCCCCAGCCCGCCCAACCTACGCATTCCGACCACGACAAGATCATTCTGCAGTTCGGGAAGGTCGGCAAGGACATATTTACGATGGATTATCGATACCCGCTGTCTGCATTCCAGGCTTTTGCTATATGTCTCAGCAGCTTTGACACCAAATTGGCGTGTGAATAG 1305 47.59 MSFRSILRDVRDGFGSLSRRSFELRLSSHSRGKSHGPVHEFDDEPLLIQTSRWASLPPELLLDVVRRLEASENTWPSRRNVVACAAVCRSWRDVCKEIVKSPEFSGKITFPIALKQPGPRDGTIQCFIKRNKSNLTYHLYLCLSPTLLVENGKFLLSAKRMRRTTSTEYVISLAADDISRSSNGYIGKLRSNFLGTKFIIYDTQIPYNGNQIPTLGRSRRFYSKKVSPKVPAGSYSIAQIAYELNVLGTRGPRRMHCTMYSIPTSSLEPDSSVPGQPELNPRPLKDSFRSISFSKSIDHSTEFSSSRFSDVAGVLADEDGDRKDIDIPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATSPAAEVSVPSQPPPQPAQPTHSDHDKIILQFGKVGKDIFTMDYRYPLSAFQAFAICLSSFDTKLACE 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18784932 18789376 + CmoCh04G025650.1 Cmo04g02565 381540

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02565 434 Gene3D Tubby Protein; Chain A 113 428 IPR025659 -
Cmo04g02565 434 ProSitePatterns Tub family signature 1. 349 362 IPR018066 -
Cmo04g02565 434 ProSitePatterns Tub family signature 2. 419 434 IPR018066 -
Cmo04g02565 434 SUPERFAMILY F-box domain 48 96 IPR036047 GO:0005515
Cmo04g02565 434 Pfam Tub family 114 429 IPR000007 -
Cmo04g02565 434 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 434 - -
Cmo04g02565 434 SUPERFAMILY Tubby C-terminal domain-like 102 434 IPR025659 -
Cmo04g02565 434 Gene3D - 48 100 - -
Cmo04g02565 434 Pfam F-box domain 53 99 IPR001810 GO:0005515
Cmo04g02565 434 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Cmo04g02565 434 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Cmo04g02565 434 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Cmo04g02565 434 PRINTS Tubby superfamily signature 331 348 IPR000007 -
Cmo04g02565 434 PRINTS Tubby superfamily signature 349 365 IPR000007 -
Cmo04g02565 434 PRINTS Tubby superfamily signature 391 410 IPR000007 -
Cmo04g02565 434 PRINTS Tubby superfamily signature 412 434 IPR000007 -
Cmo04g02565 434 PANTHER TUBBY-RELATED 1 434 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02565 K19600 TUB, TULP; tubby and related proteins - csv:101203074 793.882
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g02565 Cmo15g00602 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01055 Cmo-Chr1:8461994 Cmo04g02565 Cmo-Chr4:18784932 4.34E-96 dispersed
Cmo04g02565 Cmo-Chr4:18784932 Cmo16g00390 Cmo-Chr16:1804780 0 dispersed
Cmo07g00480 Cmo-Chr7:2191845 Cmo04g02565 Cmo-Chr4:18784932 8.69E-137 dispersed
Cmo16g00475 Cmo-Chr16:2271385 Cmo04g02565 Cmo-Chr4:18784932 2.61E-126 dispersed
Cmo15g00602 Cmo-Chr15:2928155 Cmo04g02565 Cmo-Chr4:18784932 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1377 Blo01g01728 Blo12g00786 . Bda03g00391 Bpe02g00213 Bpe04g00353 Bma04g00369 Bma01g02507 Cmo04g02565 Cmo15g00602 . . . . . . Cpe13g00683 Bhi04g01774 Tan11g1139 . . . . . Cla08g00355 Cam08g0782 Cec08g0347 Cco08g0447 Clacu08g0497 . Cre08g0325 . . . . . . . Cme03g00315 . . Bda11g00874 . . . . . . . . . . Car04g02358 Car15g00552 Cpe01g02118 . . . . . . . . . . . . . . . Lsi08g00555 . Chy03g00507 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo04g00542 . 1 428 TUB Transcription Factor Family AT1G76900 70.7 1.1e-170 597.0
Cmo16g00390 . 18 445 TUB Transcription Factor Family AT1G76900 69.4 6.8e-168 587.8
Cmo15g00602 CST 1 436 TUB Transcription Factor Family AT1G76900 70.6 8.9e-168 587.4
Cmo04g02565 CST 1 434 TUB Transcription Factor Family AT1G76900 68.1 2.9e-166 582.4
Cmo01g01055 . 13 566 TUB Transcription Factor Family AT1G76900 55.1 1.1e-152 537.3
Cmo16g00672 . 1 413 TUB Transcription Factor Family AT1G76900 51.6 5.5e-117 418.7
Cmo04g00803 . 1 413 TUB Transcription Factor Family AT1G76900 50.2 1.1e-112 404.4
Cmo16g00390 . 191 445 TUB Transcription Factor Family AT1G25280 73.4 2.5e-101 365.9
Cmo04g00542 . 174 428 TUB Transcription Factor Family AT1G25280 72.4 1.8e-99 359.8
Cmo04g02565 CST 175 434 TUB Transcription Factor Family AT1G25280 68.8 1.3e-89 327.0
Cmo15g00602 CST 175 436 TUB Transcription Factor Family AT1G25280 67.5 1.1e-88 323.9
Cmo01g01055 . 330 566 TUB Transcription Factor Family AT1G25280 66.8 7.2e-85 311.2
Cmo16g00672 . 178 413 TUB Transcription Factor Family AT1G25280 54.9 1.1e-69 260.8
Cmo14g01689 CCT,ECH 154 387 TUB Transcription Factor Family AT1G25280 53.6 1.5e-69 260.4
Cmo04g00803 . 177 413 TUB Transcription Factor Family AT1G25280 56.2 4.3e-69 258.8
Cmo08g01177 CCT,CST,ECH 154 386 TUB Transcription Factor Family AT1G25280 53.2 4.7e-68 255.4
Cmo01g01979 CST 159 390 TUB Transcription Factor Family AT1G25280 53.9 4.0e-67 252.3
Cmo09g00146 CST 180 407 TUB Transcription Factor Family AT1G25280 54.2 6.8e-67 251.5
Cmo08g01177 CCT,CST,ECH 98 386 TUB Transcription Factor Family AT5G18680 62.1 3.0e-100 362.5
Cmo14g01689 CCT,ECH 98 387 TUB Transcription Factor Family AT5G18680 62.3 2.3e-95 346.3
Cmo06g01463 . 98 455 TUB Transcription Factor Family AT5G18680 50.5 5.6e-86 315.1
Cmo04g02565 CST 112 434 TUB Transcription Factor Family AT5G18680 51.8 3.4e-83 305.8
Cmo04g00542 . 113 428 TUB Transcription Factor Family AT5G18680 52.8 3.4e-83 305.8
Cmo16g00390 . 130 445 TUB Transcription Factor Family AT5G18680 52.8 2.2e-82 303.1
Cmo15g00602 CST 112 436 TUB Transcription Factor Family AT5G18680 51.2 8.3e-82 301.2
Cmo16g00672 . 116 413 TUB Transcription Factor Family AT5G18680 52.6 3.3e-78 289.3
Cmo04g00803 . 115 413 TUB Transcription Factor Family AT5G18680 53.3 1.6e-77 287.0
Cmo17g00296 CCT,CST,ECH 162 412 TUB Transcription Factor Family AT5G18680 54.8 1.1e-65 247.7
Cmo16g00672 . 1 413 TUB Transcription Factor Family AT2G18280 61.6 1.0e-140 497.3
Cmo04g00803 . 1 413 TUB Transcription Factor Family AT2G18280 60.8 1.8e-140 496.5
Cmo07g00480 . 47 479 TUB Transcription Factor Family AT2G18280 57.1 8.3e-130 461.1
Cmo09g00146 CST 1 407 TUB Transcription Factor Family AT2G18280 59.3 4.0e-124 442.2
Cmo04g00542 . 1 428 TUB Transcription Factor Family AT2G18280 52.2 3.3e-118 422.5
Cmo16g00390 . 18 445 TUB Transcription Factor Family AT2G18280 52.7 5.6e-118 421.8
Cmo08g01177 CCT,CST,ECH 1 386 TUB Transcription Factor Family AT2G18280 53.6 4.4e-115 412.1
Cmo04g02565 CST 1 434 TUB Transcription Factor Family AT2G18280 52.4 2.9e-114 409.5
Cmo14g01689 CCT,ECH 1 387 TUB Transcription Factor Family AT2G18280 52.8 1.2e-112 404.1
Cmo01g01979 CST 16 390 TUB Transcription Factor Family AT2G18280 55.1 1.9e-110 396.7
Cmo16g00475 CST 53 396 TUB Transcription Factor Family AT2G18280 50.4 2.6e-91 333.2
Cmo08g01177 CCT,CST,ECH 1 386 TUB Transcription Factor Family AT2G47900 68.5 3.0e-159 558.9
Cmo14g01689 CCT,ECH 1 387 TUB Transcription Factor Family AT2G47900 67.0 7.0e-156 547.7
Cmo06g01463 . 1 455 TUB Transcription Factor Family AT2G47900 59.0 2.8e-149 525.8
Cmo04g00542 . 1 428 TUB Transcription Factor Family AT2G47900 55.7 1.7e-130 463.4
Cmo16g00390 . 18 445 TUB Transcription Factor Family AT2G47900 55.7 5.6e-129 458.4
Cmo04g02565 CST 1 434 TUB Transcription Factor Family AT2G47900 55.2 4.7e-128 455.3
Cmo15g00602 CST 1 436 TUB Transcription Factor Family AT2G47900 54.9 2.3e-127 453.0
Cmo16g00672 . 1 413 TUB Transcription Factor Family AT2G47900 56.2 7.0e-124 441.4
Cmo04g00803 . 1 413 TUB Transcription Factor Family AT2G47900 55.8 1.2e-120 430.6
Cmo09g00146 CST 46 407 TUB Transcription Factor Family AT2G47900 60.0 8.3e-117 417.9
Cmo17g00296 CCT,CST,ECH 3 412 TUB Transcription Factor Family AT2G47900 55.3 9.2e-116 414.5
Cmo01g01979 CST 20 390 TUB Transcription Factor Family AT2G47900 53.3 1.6e-107 387.1
Cmo04g00614 CST 51 396 TUB Transcription Factor Family AT2G47900 51.1 2.9e-101 366.3
Cmo16g00475 CST 53 396 TUB Transcription Factor Family AT2G47900 50.3 4.6e-99 359.0
Cmo16g00390 . 83 445 TUB Transcription Factor Family AT1G43640 67.7 1.3e-145 513.5
Cmo04g00542 . 66 428 TUB Transcription Factor Family AT1G43640 68.3 2.9e-145 512.3
Cmo15g00602 CST 65 436 TUB Transcription Factor Family AT1G43640 65.2 3.4e-138 488.8
Cmo04g02565 CST 65 434 TUB Transcription Factor Family AT1G43640 63.8 3.2e-136 482.3
Cmo01g01055 . 74 566 TUB Transcription Factor Family AT1G43640 50.4 3.0e-126 449.1
Cmo08g01177 CCT,CST,ECH 47 386 TUB Transcription Factor Family AT1G43640 52.1 4.1e-107 385.6
Cmo14g01689 CCT,ECH 49 387 TUB Transcription Factor Family AT1G43640 53.4 1.7e-105 380.2
Cmo09g00146 CST 69 407 TUB Transcription Factor Family AT1G43640 51.1 2.4e-99 359.8
Cmo16g00672 . 69 413 TUB Transcription Factor Family AT1G43640 50.5 1.7e-97 353.6
Cmo09g00146 CST 34 407 TUB Transcription Factor Family AT1G47270 64.2 1.9e-134 476.5
Cmo16g00672 . 34 413 TUB Transcription Factor Family AT1G47270 57.9 2.2e-122 436.4
Cmo04g00803 . 34 413 TUB Transcription Factor Family AT1G47270 57.8 3.1e-121 432.6
Cmo01g01979 CST 47 390 TUB Transcription Factor Family AT1G47270 58.2 5.5e-118 421.8
Cmo07g00480 . 79 479 TUB Transcription Factor Family AT1G47270 55.3 1.4e-116 417.2
Cmo04g00542 . 1 428 TUB Transcription Factor Family AT1G47270 52.8 2.8e-114 409.5
Cmo16g00390 . 18 445 TUB Transcription Factor Family AT1G47270 51.5 1.2e-112 404.1
Cmo04g02565 CST 48 434 TUB Transcription Factor Family AT1G47270 53.3 8.5e-111 397.9
Cmo08g01177 CCT,CST,ECH 1 386 TUB Transcription Factor Family AT1G47270 51.0 1.5e-110 397.1
Cmo15g00602 CST 48 436 TUB Transcription Factor Family AT1G47270 52.2 3.6e-109 392.5
Cmo14g01689 CCT,ECH 1 387 TUB Transcription Factor Family AT1G47270 51.2 4.1e-105 379.0
Cmo16g00475 CST 1 396 TUB Transcription Factor Family AT1G53320 69.2 9.7e-152 533.9
Cmo04g00614 CST 1 396 TUB Transcription Factor Family AT1G53320 67.7 1.0e-148 523.9
Cmo16g00672 . 20 413 TUB Transcription Factor Family AT1G53320 50.9 2.4e-102 369.8
Cmo04g00803 . 20 413 TUB Transcription Factor Family AT1G53320 50.5 2.4e-102 369.8
Cmo14g01689 CCT,ECH 33 387 TUB Transcription Factor Family AT1G53320 50.8 1.4e-97 354.0
Cmo14g01689 CCT,ECH 98 387 TUB Transcription Factor Family AT3G06380 63.4 9.8e-96 347.4
Cmo08g01177 CCT,CST,ECH 98 386 TUB Transcription Factor Family AT3G06380 61.7 2.2e-95 346.3
Cmo06g01463 . 98 455 TUB Transcription Factor Family AT3G06380 52.8 1.2e-88 323.9
Cmo04g00542 . 117 428 TUB Transcription Factor Family AT3G06380 54.1 2.5e-83 306.2
Cmo16g00390 . 134 445 TUB Transcription Factor Family AT3G06380 53.8 1.1e-81 300.8
Cmo04g02565 CST 116 434 TUB Transcription Factor Family AT3G06380 52.0 3.4e-80 295.8
Cmo15g00602 CST 116 436 TUB Transcription Factor Family AT3G06380 51.1 2.2e-79 293.1
Cmo16g00672 . 120 413 TUB Transcription Factor Family AT3G06380 51.8 4.1e-78 288.9
Cmo04g00803 . 119 413 TUB Transcription Factor Family AT3G06380 53.2 4.6e-77 285.4
Cmo09g00146 CST 120 407 TUB Transcription Factor Family AT3G06380 51.0 1.7e-76 283.5
Cmo07g00480 . 192 479 TUB Transcription Factor Family AT3G06380 52.4 2.3e-73 273.1
Cmo17g00296 CCT,CST,ECH 160 412 TUB Transcription Factor Family AT3G06380 53.8 3.8e-63 239.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000394 5 6 5 8 5 3 5 3 3 3 3 3 5 3 3 5 3 6 5 3 3 3 2 3 3 3 3 14 4 2 125
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9719 PF01167 Tub 6.80E-115 CL0395 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g02565 Cmo_Chr04 FPKM 6.830623 7.810476 3.174764 3.08132 2.804717 3.181309 3.269373 3.703572 4.113564 4.090793