Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02565 ATGTCATTCCGCAGCATACTTCGTGATGTGAGGGATGGATTTGGAAGCTTATCTCGACGCAGTTTTGAACTCAGGCTGTCTAGCCATTCCAGAGGTAAATCTCATGGACCAGTTCATGAGTTTGATGATGAACCTCTGCTAATCCAAACTAGCCGCTGGGCTAGCCTTCCGCCCGAGTTATTATTGGATGTGGTTCGGAGACTAGAGGCAAGCGAGAATACTTGGCCTTCTCGGAGAAATGTTGTTGCTTGTGCTGCTGTATGTAGGTCATGGAGGGACGTGTGCAAAGAAATCGTCAAAAGTCCCGAGTTCTCCGGGAAAATTACATTCCCCATCGCCTTGAAGCAGCCCGGACCTCGTGATGGTACTATTCAATGCTTCATCAAGAGGAACAAATCTAATTTAACCTATCATCTTTATCTTTGCCTTAGTCCTACTTTACTTGTTGAGAACGGGAAATTTCTTCTTTCTGCAAAAAGAATGAGGAGAACTACTTCGACCGAGTATGTTATATCATTGGCTGCAGACGATATATCGAGATCGAGCAATGGTTATATCGGAAAGCTAAGATCAAATTTTCTGGGAACAAAGTTCATTATATATGATACACAGATTCCTTACAACGGCAACCAAATTCCGACCCTTGGCCGAAGCCGGAGATTCTACTCCAAAAAGGTCTCTCCAAAGGTACCGGCGGGTAGCTACAGCATAGCACAAATTGCATATGAGTTGAACGTATTAGGTACAAGGGGACCCCGGAGGATGCACTGCACTATGTACTCGATCCCGACTTCATCTCTTGAGCCAGATTCCTCCGTTCCAGGACAACCGGAACTCAATCCTCGCCCCCTCAAAGACTCATTTCGAAGCATTTCATTCTCCAAGTCGATCGATCATTCAACTGAGTTCAGCAGTTCCCGCTTCTCCGATGTTGCAGGAGTGCTTGCTGATGAAGATGGCGATAGGAAGGACATAGACATACCCTTGATTCTCCGAAACAAGGCACCAAGATGGCACGAGCAGTTGCAGTGTTGGTGTCTCAACTTCCGGGGGAGGGTGACGGTTGCATCTGTAAAGAATTTTCAGCTGATCGCCGCAACGTCGCCTGCTGCAGAAGTGTCGGTACCGTCACAGCCACCTCCCCAGCCCGCCCAACCTACGCATTCCGACCACGACAAGATCATTCTGCAGTTCGGGAAGGTCGGCAAGGACATATTTACGATGGATTATCGATACCCGCTGTCTGCATTCCAGGCTTTTGCTATATGTCTCAGCAGCTTTGACACCAAATTGGCGTGTGAATAG 1305 47.59 MSFRSILRDVRDGFGSLSRRSFELRLSSHSRGKSHGPVHEFDDEPLLIQTSRWASLPPELLLDVVRRLEASENTWPSRRNVVACAAVCRSWRDVCKEIVKSPEFSGKITFPIALKQPGPRDGTIQCFIKRNKSNLTYHLYLCLSPTLLVENGKFLLSAKRMRRTTSTEYVISLAADDISRSSNGYIGKLRSNFLGTKFIIYDTQIPYNGNQIPTLGRSRRFYSKKVSPKVPAGSYSIAQIAYELNVLGTRGPRRMHCTMYSIPTSSLEPDSSVPGQPELNPRPLKDSFRSISFSKSIDHSTEFSSSRFSDVAGVLADEDGDRKDIDIPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATSPAAEVSVPSQPPPQPAQPTHSDHDKIILQFGKVGKDIFTMDYRYPLSAFQAFAICLSSFDTKLACE 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18784932 18789376 + CmoCh04G025650.1 Cmo04g02565 381540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02565 434 Gene3D Tubby Protein; Chain A 113 428 IPR025659 -
Cmo04g02565 434 ProSitePatterns Tub family signature 1. 349 362 IPR018066 -
Cmo04g02565 434 ProSitePatterns Tub family signature 2. 419 434 IPR018066 -
Cmo04g02565 434 SUPERFAMILY F-box domain 48 96 IPR036047 GO:0005515
Cmo04g02565 434 Pfam Tub family 114 429 IPR000007 -
Cmo04g02565 434 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 434 - -
Cmo04g02565 434 SUPERFAMILY Tubby C-terminal domain-like 102 434 IPR025659 -
Cmo04g02565 434 Gene3D - 48 100 - -
Cmo04g02565 434 Pfam F-box domain 53 99 IPR001810 GO:0005515
Cmo04g02565 434 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Cmo04g02565 434 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Cmo04g02565 434 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Cmo04g02565 434 PRINTS Tubby superfamily signature 331 348 IPR000007 -
Cmo04g02565 434 PRINTS Tubby superfamily signature 349 365 IPR000007 -
Cmo04g02565 434 PRINTS Tubby superfamily signature 391 410 IPR000007 -
Cmo04g02565 434 PRINTS Tubby superfamily signature 412 434 IPR000007 -
Cmo04g02565 434 PANTHER TUBBY-RELATED 1 434 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g02565 Cmo15g00602 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01055 Cmo-Chr1:8461994 Cmo04g02565 Cmo-Chr4:18784932 4.34E-96 dispersed
Cmo04g02565 Cmo-Chr4:18784932 Cmo16g00390 Cmo-Chr16:1804780 0 dispersed
Cmo07g00480 Cmo-Chr7:2191845 Cmo04g02565 Cmo-Chr4:18784932 8.69E-137 dispersed
Cmo16g00475 Cmo-Chr16:2271385 Cmo04g02565 Cmo-Chr4:18784932 2.61E-126 dispersed
Cmo15g00602 Cmo-Chr15:2928155 Cmo04g02565 Cmo-Chr4:18784932 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9719 PF01167 Tub 6.80E-115 CL0395 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02565 K19600 - csv:101203074 793.882