Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo04g02565 | ATGTCATTCCGCAGCATACTTCGTGATGTGAGGGATGGATTTGGAAGCTTATCTCGACGCAGTTTTGAACTCAGGCTGTCTAGCCATTCCAGAGGTAAATCTCATGGACCAGTTCATGAGTTTGATGATGAACCTCTGCTAATCCAAACTAGCCGCTGGGCTAGCCTTCCGCCCGAGTTATTATTGGATGTGGTTCGGAGACTAGAGGCAAGCGAGAATACTTGGCCTTCTCGGAGAAATGTTGTTGCTTGTGCTGCTGTATGTAGGTCATGGAGGGACGTGTGCAAAGAAATCGTCAAAAGTCCCGAGTTCTCCGGGAAAATTACATTCCCCATCGCCTTGAAGCAGCCCGGACCTCGTGATGGTACTATTCAATGCTTCATCAAGAGGAACAAATCTAATTTAACCTATCATCTTTATCTTTGCCTTAGTCCTACTTTACTTGTTGAGAACGGGAAATTTCTTCTTTCTGCAAAAAGAATGAGGAGAACTACTTCGACCGAGTATGTTATATCATTGGCTGCAGACGATATATCGAGATCGAGCAATGGTTATATCGGAAAGCTAAGATCAAATTTTCTGGGAACAAAGTTCATTATATATGATACACAGATTCCTTACAACGGCAACCAAATTCCGACCCTTGGCCGAAGCCGGAGATTCTACTCCAAAAAGGTCTCTCCAAAGGTACCGGCGGGTAGCTACAGCATAGCACAAATTGCATATGAGTTGAACGTATTAGGTACAAGGGGACCCCGGAGGATGCACTGCACTATGTACTCGATCCCGACTTCATCTCTTGAGCCAGATTCCTCCGTTCCAGGACAACCGGAACTCAATCCTCGCCCCCTCAAAGACTCATTTCGAAGCATTTCATTCTCCAAGTCGATCGATCATTCAACTGAGTTCAGCAGTTCCCGCTTCTCCGATGTTGCAGGAGTGCTTGCTGATGAAGATGGCGATAGGAAGGACATAGACATACCCTTGATTCTCCGAAACAAGGCACCAAGATGGCACGAGCAGTTGCAGTGTTGGTGTCTCAACTTCCGGGGGAGGGTGACGGTTGCATCTGTAAAGAATTTTCAGCTGATCGCCGCAACGTCGCCTGCTGCAGAAGTGTCGGTACCGTCACAGCCACCTCCCCAGCCCGCCCAACCTACGCATTCCGACCACGACAAGATCATTCTGCAGTTCGGGAAGGTCGGCAAGGACATATTTACGATGGATTATCGATACCCGCTGTCTGCATTCCAGGCTTTTGCTATATGTCTCAGCAGCTTTGACACCAAATTGGCGTGTGAATAG | 1305 | 47.59 | MSFRSILRDVRDGFGSLSRRSFELRLSSHSRGKSHGPVHEFDDEPLLIQTSRWASLPPELLLDVVRRLEASENTWPSRRNVVACAAVCRSWRDVCKEIVKSPEFSGKITFPIALKQPGPRDGTIQCFIKRNKSNLTYHLYLCLSPTLLVENGKFLLSAKRMRRTTSTEYVISLAADDISRSSNGYIGKLRSNFLGTKFIIYDTQIPYNGNQIPTLGRSRRFYSKKVSPKVPAGSYSIAQIAYELNVLGTRGPRRMHCTMYSIPTSSLEPDSSVPGQPELNPRPLKDSFRSISFSKSIDHSTEFSSSRFSDVAGVLADEDGDRKDIDIPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATSPAAEVSVPSQPPPQPAQPTHSDHDKIILQFGKVGKDIFTMDYRYPLSAFQAFAICLSSFDTKLACE | 434 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 18784932 | 18789376 | + | CmoCh04G025650.1 | Cmo04g02565 | 381540 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo04g02565 | 434 | Gene3D | Tubby Protein; Chain A | 113 | 428 | IPR025659 | - | |
Cmo04g02565 | 434 | ProSitePatterns | Tub family signature 1. | 349 | 362 | IPR018066 | - | |
Cmo04g02565 | 434 | ProSitePatterns | Tub family signature 2. | 419 | 434 | IPR018066 | - | |
Cmo04g02565 | 434 | SUPERFAMILY | F-box domain | 48 | 96 | IPR036047 | GO:0005515 | |
Cmo04g02565 | 434 | Pfam | Tub family | 114 | 429 | IPR000007 | - | |
Cmo04g02565 | 434 | PANTHER | TUBBY-LIKE F-BOX PROTEIN | 1 | 434 | - | - | |
Cmo04g02565 | 434 | SUPERFAMILY | Tubby C-terminal domain-like | 102 | 434 | IPR025659 | - | |
Cmo04g02565 | 434 | Gene3D | - | 48 | 100 | - | - | |
Cmo04g02565 | 434 | Pfam | F-box domain | 53 | 99 | IPR001810 | GO:0005515 | |
Cmo04g02565 | 434 | PRINTS | Tubby superfamily signature | 169 | 185 | IPR000007 | - | |
Cmo04g02565 | 434 | PRINTS | Tubby superfamily signature | 185 | 209 | IPR000007 | - | |
Cmo04g02565 | 434 | PRINTS | Tubby superfamily signature | 234 | 261 | IPR000007 | - | |
Cmo04g02565 | 434 | PRINTS | Tubby superfamily signature | 331 | 348 | IPR000007 | - | |
Cmo04g02565 | 434 | PRINTS | Tubby superfamily signature | 349 | 365 | IPR000007 | - | |
Cmo04g02565 | 434 | PRINTS | Tubby superfamily signature | 391 | 410 | IPR000007 | - | |
Cmo04g02565 | 434 | PRINTS | Tubby superfamily signature | 412 | 434 | IPR000007 | - | |
Cmo04g02565 | 434 | PANTHER | TUBBY-RELATED | 1 | 434 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo04g02565 | Cmo15g00602 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g01055 | Cmo-Chr1:8461994 | Cmo04g02565 | Cmo-Chr4:18784932 | 4.34E-96 | dispersed | |
Cmo04g02565 | Cmo-Chr4:18784932 | Cmo16g00390 | Cmo-Chr16:1804780 | 0 | dispersed | |
Cmo07g00480 | Cmo-Chr7:2191845 | Cmo04g02565 | Cmo-Chr4:18784932 | 8.69E-137 | dispersed | |
Cmo16g00475 | Cmo-Chr16:2271385 | Cmo04g02565 | Cmo-Chr4:18784932 | 2.61E-126 | dispersed | |
Cmo15g00602 | Cmo-Chr15:2928155 | Cmo04g02565 | Cmo-Chr4:18784932 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9719 | PF01167 | Tub | 6.80E-115 | CL0395 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo04g02565 | K19600 | - | csv:101203074 | 793.882 |