Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02571 ATGTGCTTGCTCAAGGTGGCGAATCGGCGAGGAATTGGAGGTGACTTGGGACCGTTTCCAAGTGGCGGCGGCGATGGCGACGGTGATAACGGCAAAAAGTTATTCTACAGTCAACAAAATGACGGCGATTATTATTCCGCGGTCGGAGAGGTGTCGGCGATGGTGTCGGTGTTAACCGATGTGGTGTCTGGGGTGGGGGCAGCCGACTCAAACTACAGTGGCGGGCAGGTTTTCTCGTCTTCATCGTCAACGTCGACTTCTTCCCCGCTTTCGAGTTTCTCGTCGGAACCGAGCTATGTGTCGGCGATGAGTTCTTGGGTTGGCCAGAAACGACTACGTGAAAGAGAAAATGCAGAAACAGAGCGTAATTTTGATTCTCTTTCGCGGGTTTTTAGTGGTTTTAATGGACAATCTTCCTCCGCCGTGATTACTGCAGTGAAAGAAGAAATTCCAATTCCGTACACCGGAATTTCAAATCCCGGCACCGCCGTTGCGGCGTCTCCGATGAGCGAGACGGCGGCGGCTACGGCTGTTAGCGATAGAAGAAGAAGATACAGAGGAGTACGGCAGCGGCCATGGGGGAAATGGGCGGCGGAGATTCGCGATCCGCATAAGGCGGCTAGAGTTTGGCTCGGGACGTTCGACACGGCGGAGGCTGCCGCTAGAGCATACGACGAAGCTGCTCTCCGATTCAGAGGAAACAAAGCGAAACTCAATTTCCCTGAAAATGTTGGATTACTTCCTCCGCAGCAGCAGCACATTCCGATATCCAGCCCCCAATTTGTTCCGCCACGGACGGCGGCGCTTCAGATACAAACTTACCGGGATTACGTGGAATATTCCAATTTTCTTCAAAGCTCCGGCGACTTCCTTGGACAACCTTCGAGTTTACTGCAGCAAATGTATTACAATGCGCAGTTGACTCCGTTTCAATATTTGCCGGCGCCGGCGCCGTCGCTGTCCTCTGTTTCAAATTCTGTTTTTATTCCACCGCAGCAGCAGCAGCAGCAACAAATGGGGTTATTCCGGCCGCCGCGGTCGCAAAATCAAAACCAGGACGGCTCCGATTACTTCCCAGGTACGTCGTGGAATGATTCCGGTGGTCCGTCATCCGGTTGA 1119 53.08 MCLLKVANRRGIGGDLGPFPSGGGDGDGDNGKKLFYSQQNDGDYYSAVGEVSAMVSVLTDVVSGVGAADSNYSGGQVFSSSSSTSTSSPLSSFSSEPSYVSAMSSWVGQKRLRERENAETERNFDSLSRVFSGFNGQSSSAVITAVKEEIPIPYTGISNPGTAVAASPMSETAAATAVSDRRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPENVGLLPPQQQHIPISSPQFVPPRTAALQIQTYRDYVEYSNFLQSSGDFLGQPSSLLQQMYYNAQLTPFQYLPAPAPSLSSVSNSVFIPPQQQQQQQMGLFRPPRSQNQNQDGSDYFPGTSWNDSGGPSSG 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18820203 18821836 + CmoCh04G025710.1 Cmo04g02571 381546

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02571 372 Gene3D AP2/ERF domain 183 243 IPR036955 GO:0003700|GO:0006355
Cmo04g02571 372 ProSiteProfiles AP2/ERF domain profile. 184 241 IPR001471 GO:0003700|GO:0006355
Cmo04g02571 372 PRINTS Ethylene responsive element binding protein signature 185 196 IPR001471 GO:0003700|GO:0006355
Cmo04g02571 372 PRINTS Ethylene responsive element binding protein signature 207 223 IPR001471 GO:0003700|GO:0006355
Cmo04g02571 372 PANTHER DNA-BINDING DOMAIN 48 366 IPR044808 GO:0003700|GO:0009873
Cmo04g02571 372 SMART rav1_2 184 247 IPR001471 GO:0003700|GO:0006355
Cmo04g02571 372 MobiDBLite consensus disorder prediction 332 372 - -
Cmo04g02571 372 Pfam AP2 domain 184 233 IPR001471 GO:0003700|GO:0006355
Cmo04g02571 372 CDD AP2 192 243 IPR001471 GO:0003700|GO:0006355
Cmo04g02571 372 MobiDBLite consensus disorder prediction 74 97 - -
Cmo04g02571 372 SUPERFAMILY DNA-binding domain 184 242 IPR016177 GO:0003677
Cmo04g02571 372 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 48 366 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02571 - - - bhj:120069823 405.986
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g02571 Cmo09g01245 CCT
Cmo04g02571 Cmo09g01245 ECH
Cmo04g02571 Cmo15g00593 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02571 Cmo-Chr4:18820203 Cmo03g01057 Cmo-Chr3:7875428 9.24E-36 dispersed
Cmo09g01245 Cmo-Chr9:10711480 Cmo04g02571 Cmo-Chr4:18820203 1.26E-31 transposed
Cmo15g00593 Cmo-Chr15:2876855 Cmo04g02571 Cmo-Chr4:18820203 4.21E-108 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1351 Blo01g01736 Blo12g00779 Bda01g00864 Bda03g00400 Bpe02g00207 Bpe04g00363 Bma04g00381 Bma01g02513 Cmo04g02571 Cmo15g00593 . . . . . . . Bhi04g02173 . . . . . . Cla08g00268 Cam08g0708 Cec08g0269 Cco08g0355 Clacu08g0418 . Cre08g0246 Cone4ag1483 Cone7ag1461 Cone17ag0776 Cone20ag0368 . . . Cme03g00299 Blo17g00139 Blo18g00150 Bda11g00867 Bda13g01423 Bpe02g01101 Bpe14g00434 . Bma02g00158 . . Cmo09g01245 . . Car04g02363 Car09g01066 . . . . . . . . . . . . . . . . Lsi08g00564 . Chy03g00496 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003344 4 0 4 4 4 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9721 PF00847 AP2 7.00E-15 CL0081 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g02571 Cmo_Chr04 FPKM 46.77433 50.69659 90.434166 82.707535 47.162853 44.715298 53.812366 55.704597 62.035984 64.879913