Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02572 ATGTCGGGGGCCTGTTCATTCCCCTTTGCCAAAATCAAAATCCCCACCGTTTCCTCGTCGTCGGCGGCCGTTTCTCCGTCGGCTTCGGCTGCCAGTTCCACTTCTTCATCGTCCGCTCACAGTTCCATCAGATTCTCCTCCTCCAAACCTTTTGTCTTCACCATTCGGAGCTCTCAGACCGACGGCCCTATCAGGAGACCGGCGGCTCCTTCTCTGAGAGAGCCGTCGCCGCCTTCGCCGCCGCCTCCTCTCAAGCCGCCTCCTTCTTCGGCGACGGCTCCTGTTGCTCAGCCGTCGGGGAAGGCGTATGTTGCAAAACAGGATAATACGATCACTTTAGAGTTTCAGAGGCAGAAGGCTAAGGAGCTTCAGGAGTATTTTAAGCAGAAGAAGCTTGATGAGGCTGATCAGGGACCGTTCTTTGGCTTCATCGGGAAGAATGAAATTTCTAATGGCAGGTGGGCAATGTTTGGTTTTGCTGTTGGATTGCTGACAGAGTATGCAACTGGTTCAAACTTTGTTGATCAAGTAAAGATCCTCCTTTCAAATTTTGGGATAGTTGATCTCGATTGA 573 51.66 MSGACSFPFAKIKIPTVSSSSAAVSPSASAASSTSSSSAHSSIRFSSSKPFVFTIRSSQTDGPIRRPAAPSLREPSPPSPPPPLKPPPSSATAPVAQPSGKAYVAKQDNTITLEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILLSNFGIVDLD 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18826031 18828196 - CmoCh04G025720.1 Cmo04g02572 381547

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02572 190 PANTHER UPF0041 BRAIN PROTEIN 44-RELATED 1 189 - -
Cmo04g02572 190 PANTHER MYB-LIKE PROTEIN U 1 189 - -
Cmo04g02572 190 MobiDBLite consensus disorder prediction 56 99 - -
Cmo04g02572 190 Gene3D Chlorophyll a/b binding protein domain 90 183 - -
Cmo04g02572 190 MobiDBLite consensus disorder prediction 70 93 - -
Cmo04g02572 190 MobiDBLite consensus disorder prediction 17 44 - -
Cmo04g02572 190 SUPERFAMILY Chlorophyll a-b binding protein 136 179 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02572 - - - cmo:103485601 218.394
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g02572 Cmo15g00589 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g00589 Cmo-Chr15:2838210 Cmo04g02572 Cmo-Chr4:18826031 2.00E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1342 Blo01g01739 . . Bda03g00402 Bpe02g00203 Bpe04g00366 Bma04g00383 . Cmo04g02572 Cmo15g00589 . . . . Sed11g1371 . Cpe13g00694 Bhi04g01756 Tan11g1116 Cmetu03g0534 . Hepe02g2808 . Lcy10g1365 . . . . . . . Cone4ag1473 Cone7ag1467 . . . . . . . . Bda11g00864 . . . . . . . . . . Car04g02365 Car15g00541 Cpe01g02127 . . . . . . . . . . . . . . . Lsi08g00569 . Chy03g00492 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006504 1 1 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g02572 Cmo_Chr04 FPKM 296.85202 297.891632 411.769989 378.160553 275.658936 335.150787 246.11087 303.253479 335.495575 287.769623