Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02579 ATGAAGTTTCTCTTTTCGTTCTTACTTCTCTCTGTTGTTTCTCCAGCTTTGTTTCACTCTGCACTCGCTCGAGGCGGCCTCAATCGCTCCATTTCGCCAGATTTCGTTAGTCTTGCATATGGAGGTTCTGCTAGATTTTTACTCGAGGACAATAATTCTAAACGAAGTGACAAGATCATGCAAGGTTATATGACCAATAAAGAGCTTGAACGGGCCGTTAAAGCTTTTGGTAAAAAATGTAGTAAAATTTCTAAGATATACAGTATTGGAGACAGCGTGCAAGGGTTTCCACTGTGGGTTATCGAAATTTCTGACAAGCCTGGCCAGGAAGAAGCGGAACCTGCATTTAAGTACATAGGAAATGTACATGGAGATGAACCTGTTGGCAGGGAGCTTCTCTTGCAATTTGCAAACTGGATATGTGATAATTACCTGAAGGATCCATTGGCTACACTGATTGTGGAGAATGTTCATCTTCATATACTTCCATCTATGAATCCGGATGGATTTTCTCTTCGGACACGTAATAATGCAAACAATGTGGATCTAAACAGAGATTTCCCTGACCAGTTCTTTTTCATCAATGATGATGAATATGCACGGCAACCTGAAACGAAGGCAATTATGAAGTGGATGAGAGACATACATTTCACTGCCTCTGCCACTTTGCATGGGGGTGCACTTGTTGCAAATTACCCATGGGATGGCACTGCAGATAAAAGGAAAGATTACTATGCATGTCCTGATGATCAAACATTCCGGTTCATGGCTAGTGTCTATAGTCGCTCACATCATAACATGTCTTTAAGCCAAGAATTTGAAGGAGGAATTACAAATGGAGCTTCGTGGTACCCTATATATGGTGGCATGCAAGACTGGAACTATATACACGGTGGCTGTTTTGAGTTGACTTTAGAGATTACAGACAACAAATGGCCTCCTGCTAATGAGCTTGCTACCATCTTTGAGTATAACAAGTTGAGCATGCTTAATCTCGTTGCGAGCCTTGCTCAGACAGGAATTCATGGAAGGATTTTCTCATCAGAGAGTGGAAGGCCATTACCTGGAACCATTACACTCAAGGGAATAGATTACTTGGTTAAAGCTAGCGAAACGCTGGGGGTCTACCATCGTTTAGCTGCACCAAAACAGAAATATGAAGTAAGTGCGTCGATGCCCGGGTACAAGTCGAAGAACACGAGCATCTGGTTGGAGGAGGGAGCTATGTCTGTGGACTTTATTCTGGATCCCGACACCACAACCAAAAGAAAAGTAATGCAAAACTGTGATTGCTACGGTGGCCATGGGGTGAACTTTGTGGGCTATATTTGGGGACACTACTATGAGGCGTATATTTTCTTGGCGGTTGTTTTGGTATTTATTTGCTTTTTATTTCAGAAGAAGATGAAGTCTAGACTTCCCAAGCAAAGATTAGTTGCATTGCCAAAGAGGATTGTGGTCTGA 1464 42.35 MKFLFSFLLLSVVSPALFHSALARGGLNRSISPDFVSLAYGGSARFLLEDNNSKRSDKIMQGYMTNKELERAVKAFGKKCSKISKIYSIGDSVQGFPLWVIEISDKPGQEEAEPAFKYIGNVHGDEPVGRELLLQFANWICDNYLKDPLATLIVENVHLHILPSMNPDGFSLRTRNNANNVDLNRDFPDQFFFINDDEYARQPETKAIMKWMRDIHFTASATLHGGALVANYPWDGTADKRKDYYACPDDQTFRFMASVYSRSHHNMSLSQEFEGGITNGASWYPIYGGMQDWNYIHGGCFELTLEITDNKWPPANELATIFEYNKLSMLNLVASLAQTGIHGRIFSSESGRPLPGTITLKGIDYLVKASETLGVYHRLAAPKQKYEVSASMPGYKSKNTSIWLEEGAMSVDFILDPDTTTKRKVMQNCDCYGGHGVNFVGYIWGHYYEAYIFLAVVLVFICFLFQKKMKSRLPKQRLVALPKRIVV 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18867318 18875874 - CmoCh04G025790.1 Cmo04g02579 381554

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02579 487 ProSitePatterns Zinc carboxypeptidases, zinc-binding region 1 signature. 114 136 IPR000834 GO:0004181|GO:0006508|GO:0008270
Cmo04g02579 487 PANTHER PROTEASE M14 CARBOXYPEPTIDASE 52 417 - -
Cmo04g02579 487 PANTHER CARBOXYPEPTIDASE D 52 417 IPR015567 GO:0004181|GO:0006518|GO:0008270
Cmo04g02579 487 SUPERFAMILY Zn-dependent exopeptidases 59 334 - -
Cmo04g02579 487 Gene3D - 339 418 - -
Cmo04g02579 487 Gene3D Zn peptidases 61 337 - -
Cmo04g02579 487 CDD M14_CP_plant 63 335 - -
Cmo04g02579 487 Pfam Zinc carboxypeptidase 70 324 IPR000834 GO:0004181|GO:0006508|GO:0008270
Cmo04g02579 487 PRINTS Carboxypeptidase A metalloprotease (M14) family signature 89 101 IPR000834 GO:0004181|GO:0006508|GO:0008270
Cmo04g02579 487 PRINTS Carboxypeptidase A metalloprotease (M14) family signature 114 128 IPR000834 GO:0004181|GO:0006508|GO:0008270
Cmo04g02579 487 PRINTS Carboxypeptidase A metalloprotease (M14) family signature 180 188 IPR000834 GO:0004181|GO:0006508|GO:0008270
Cmo04g02579 487 PRINTS Carboxypeptidase A metalloprotease (M14) family signature 221 234 IPR000834 GO:0004181|GO:0006508|GO:0008270
Cmo04g02579 487 ProSitePatterns Zinc carboxypeptidases, zinc-binding region 2 signature. 224 234 IPR000834 GO:0004181|GO:0006508|GO:0008270
Cmo04g02579 487 SUPERFAMILY Carboxypeptidase regulatory domain-like 340 424 IPR008969 -
Cmo04g02579 487 SMART zn_carb 63 317 IPR000834 GO:0004181|GO:0006508|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02579 - - K07752 csv:101220508 853.203
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1320 . . . . . . . . Cmo04g02579 . . . . . Sed11g1378 . . Bhi04g01745 Tan11g1099 . . Hepe02g2814 . Lcy10g1371 Cla08g00746 Cam08g1173 Cec08g0763 Cco08g0870 Clacu08g0879 . Cre08g0681 . . . Cone20ag0364 . . . Cme03g01053 Blo17g00133 . . Bda13g01417 . . . Bma02g00153 . . . . . Car04g02372 . Cpe01g02133 . . . . . . . . . . . . . . . Lsi08g00575 . Chy03g00488 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010573 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g02579 Cmo_Chr04 FPKM 0.0 0.0 2.057329 2.082718 11.468143 11.411171 11.680681 0.0 0.0 0.45184