Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02580 ATGAAGCATAATTCCAAGAATCAACCTCAGCTTTTCTGGCCAAGAGTGGTCCTGCGGAAATGGCTGAATATCAGTGCTAAAGAGTCGGATTACAGTGCCGATACCGAAGACGATGAGGATGTTAATTCGTCCGATTTTGAGACTGAAGAATGCAATAGGGGAAGAGAATCACGCTTTAAGGTAGACAACAGAGATGAACCACTGGTTGATGCTAATGATGGGCTGCCGAGGTTGAGAAGAAGAAATTCAGAAACATTTAGGATGCAATATATAAACGCGAAAGATCTCAGAATATGTGTTGCGACTTGGAATGTTGGAGGAAAACTACCTCCTGAAGATCTGGATATTGATGGCTGGATAGATACCAGTGAGCCAGCTGATATCTATGTCCTTGGTCTCCAGGAGATTGTACCATTGAATGCTGGAAATATATTTGGTGCTGAAGATAGTCGCCCAGTTGCTAGGTGGGAAGATATTATCCGTGAAACATTGAATAGAGTTAGACCTGCTACAACCAAGATTAAATGCTTTAGTGATCCACCGTCCCCATCAAAGTTTAAGCCATCTGATGACATCCCAGATTTAGAGGAGGAGATTCTGCAGGAAAGTGATAGTGATGTTGGTGTGGAAGTGCATCCATGTGATGAAGAATTCTATGGGAAGGAAAATGGCGATGGACTGGTAGCTGATAAAAATCTAAGCTGGAAGTTCCCAATTTCGGATCTTTCTGCAAATACCATACCAGAGATACCTGTAGAACAGGATTTAGTGAGGCAGTATTCTTCTCCAAAGAGATTGGATCGGTTAAATTGCTTCACAGAGAATGAGGAGGCTGTCTTTCAACAGAACAGAAGATTAACTAAAATGCTTAGTGGGACAGAAAGGATCGGTTTGAGTTGGCCTGAACCTCCACTACATTTACTTCCCCATCATGTTTCTGAGAGACCCAACTCTTTTAAATCAATGAATTCATTTAAAACAACCAAGTCCTTTAGGACATATAGTTCTTTCAAGTCAACCATGAATGAAATGCCGTCAGGGATTTCTTTGCTTGGAGAAATTGATCTTGAGTCTCTCCTAAAACAGAAGAGAAGATCGTCATATATTAGAATAGTAAGTAAACAAATGGTTGGTGTTTTCCTCACAGTATGGGTTCGTAGGAGTTTGCGAAGGCACATTCAGAATGTAAATGTTTCTACTGTTGGTGTTGGTGTAATGGGCTACATCGGTAACAAGGGATCCATATCTGTCAGCATGTCCATATACCAGACCCTATTTTGCTTTATATGCACACACCTTACATCAGGTGAGAAGGATGGAGATGAACTTAAACGAAATGCTGATGTGAGCGAAATACACCGAAGAACTCAATTCCATCCACTTAATGGTATTGGGTTAACTAAAGTTATCCACGATCACGAGCGGATAATCTGGTTGGGTGATTTAAATTATCGTATCAACTTGCCTTATGAGAAGACAAGAGATCTTATCTCGAGAAAAGAGTGGTCCAAATTGGCTGAGAGTGATCAGTTATCGAGGGAACTTAAGAAGGGTCGTGCATTTGATGGATGGACTGAGGGAAACCTTAATTTCCCACCAACCTATAAATACGAGATCAATTCAGAAAAGTATTACGGTGAGGATCCAAAAGTTGGACGGCGGACTCCAGCATGGTGTGACCGCATACTTTCATATGGAAAGGGATTGAAGCTGTGCAGTTATAGGAGGACTGAAATTAAATTTTCTGATCATAGACCAGTGACAGCCACCTACGTGGCCGAGGTCGAGGTCTTCTGTCCCCGTAAGCTACAACGAGCTCTAACATTCACAGACGCAGAGATCGAAAATGGGGAAGCAGCAATGGATGCCGAAAATTTTATCTGA 1884 41.77 MKHNSKNQPQLFWPRVVLRKWLNISAKESDYSADTEDDEDVNSSDFETEECNRGRESRFKVDNRDEPLVDANDGLPRLRRRNSETFRMQYINAKDLRICVATWNVGGKLPPEDLDIDGWIDTSEPADIYVLGLQEIVPLNAGNIFGAEDSRPVARWEDIIRETLNRVRPATTKIKCFSDPPSPSKFKPSDDIPDLEEEILQESDSDVGVEVHPCDEEFYGKENGDGLVADKNLSWKFPISDLSANTIPEIPVEQDLVRQYSSPKRLDRLNCFTENEEAVFQQNRRLTKMLSGTERIGLSWPEPPLHLLPHHVSERPNSFKSMNSFKTTKSFRTYSSFKSTMNEMPSGISLLGEIDLESLLKQKRRSSYIRIVSKQMVGVFLTVWVRRSLRRHIQNVNVSTVGVGVMGYIGNKGSISVSMSIYQTLFCFICTHLTSGEKDGDELKRNADVSEIHRRTQFHPLNGIGLTKVIHDHERIIWLGDLNYRINLPYEKTRDLISRKEWSKLAESDQLSRELKKGRAFDGWTEGNLNFPPTYKYEINSEKYYGEDPKVGRRTPAWCDRILSYGKGLKLCSYRRTEIKFSDHRPVTATYVAEVEVFCPRKLQRALTFTDAEIENGEAAMDAENFI 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18877131 18886260 - CmoCh04G025800.1 Cmo04g02580 381555

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02580 627 Gene3D Endonuclease/exonuclease/phosphatase 268 625 IPR036691 -
Cmo04g02580 627 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 11 621 IPR045849 GO:0004445|GO:0046855
Cmo04g02580 627 SMART i5p_5 285 599 IPR000300 GO:0016791|GO:0046856
Cmo04g02580 627 SUPERFAMILY DNase I-like 87 609 IPR036691 -
Cmo04g02580 627 Gene3D Endonuclease/exonuclease/phosphatase 76 179 IPR036691 -
Cmo04g02580 627 MobiDBLite consensus disorder prediction 29 57 - -
Cmo04g02580 627 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 3 11 621 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02580 - - - csv:101220281 1104.35
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g02580 Cmo15g00580 CST
Cmo04g02580 Cmo15g00607 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02580 Cmo-Chr4:18877131 Cmo06g01398 Cmo-Chr6:10245452 2.64E-119 dispersed
Cmo16g01129 Cmo-Chr16:8035597 Cmo04g02580 Cmo-Chr4:18877131 2.14E-159 transposed
Cmo15g00580 Cmo-Chr15:2783779 Cmo04g02580 Cmo-Chr4:18877131 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1278 . . . . . . . . Cmo04g02580 Cmo15g00607 . . . . . . Cpe13g00679 . . . . . . . Cla08g00707 Cam08g1134 Cec08g0723 Cco08g0831 Clacu08g0842 . Cre08g0643 Cone4ag1505 Cone7ag1445 Cone17ag0789 Cone20ag0384 . . . Cme03g00326 . . . . Bpe02g01112 Bpe14g00446 . . . . . . . Car04g02373 . Cpe01g02134 . . . . . . . . . . . . . . . Lsi08g00551 . . .
Vvi18g1334 . . . . . . . . Cmo04g02580 Cmo15g00580 . . . . . . Cpe13g00701 Bhi04g01737 . . . . . . Cla08g00742 Cam08g1169 Cec08g0759 Cco08g0867 Clacu08g0876 . Cre08g0677 . . Cone17ag0768 Cone20ag0358 . . . . . . . Bda13g01416 . . Bma01g01429 . . . . . . Car04g02373 Car15g00534 Cpe01g02134 . . . . . . . . . . . . . . . Lsi08g00578 . Chy03g00484 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003115 1 10 2 1 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 4 1 52
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g02580 Cmo_Chr04 FPKM 4.855072 7.544884 2.449685 5.057405 0.0 0.679956 1.774369 5.391116 4.878167 4.03642