Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo04g02588 | ATGGCAACTCCAGTTACGGCACCGGCGGCTGTCGCTACAGTTCAAACGGCGGCGATTCCTCCGACTGACTCTGTCGCCACTGGAGGCGGATTCTTGAGTTCTTCATTGTATGTTGGCGATCTGGACCCGACTGTGGACGAGGGACAGCTTTTGGAACTGTTTAGCCAAGTGGCTCAGGTTGTCTCTATTAGGGTTTGCAGGGATCAGACAGGCAGGCAATCGCTTGGATACGCTTATGTTAATTTCAGCAATCATCAGGAAGCTTCCAGCGCCTTGAAACATTTGAATTTCAGCCCCATTAATGGGAAGCCTATCAGGATTATGATGTCGAATCGAGATCCTAGCATCCGAAAAAGTGGCCATGCAAATGTTTTCATCAAAAATCTGGACGCATCAATTGATAACAAGGCATTGCATGATACATTTGCTACCTTCGGTCCTATTCTTTCGTGTAAAGTTGCCATTGATAGCAATGGTCAATCAAAAGGGTATGGATTTGTGCAATTTGAAAATGAGATATCTGCAAACATTGCTATAGTTAGATTGAATGGCATGCTGCTCAATGATAAGCAAGTTTTTGTTGGACATTTTATTCGACGTCAGGAAAGGATTCAGGCAAATGGATCGACATTTACTAATGTTTATGTGAAGAATTTACTGGAAACTACCACAGCTGATGACCTAAAAAATCTTTTTGCTACACATGGTGCCATTACTAGTGCAGTTGTCATGACAGATTTGAAAGGGAAGTCCAAATGTTTTGGCTTTGTGAATTTCCAGAGCCCAGACTCTGCTGCTGCTGCAGTTGAAATGTTGAATGGTACCATCCTTGGTGATGAAAAGGTTCTGTATGTAGCCAGGGCTCAGAAGAAAGTAGAAAGGGAGGCCGAGTTGAAAGCAAAATTTGAACAGGAACGAAAGAGTAGATTTGAAAAATTACAAGGTGCTAATTTGTATATAAAAAACCTTGATGACCATATTGATGATGAGAAGCTCAAAGAGTTATTCTCTGAGTATGGAACAATCACATCATGCAAGGTTATGCTTGACCAAAATGGACTGAGCAAGGGATCTGGTTTTGTAGCATTTTCTTCACCAGATGAAGCAACGAGAGCCTTGAATGAATTGAATGGAAAAATGAAGGGAAGGAAACCTCTGTTTGTGGCTGTTGCCCAGCACAAAGAAGAGAGAAAGGCTCGGCTCCAGGCTCAATTTGCTCAAGCCAGAGCAGCTGGCGCAATATCGTCTTTGCCTTCAGGAATTCCAGGGTTTCATCCAGGTGCACCACGCCTTGCACCTCAGCAGCTGTATTATGGTCAGGGAAATCCCGGGCTGGTGCCCTCACAGCCTGCTGGATACGGCTTCCAGCCTCAACTCATGACCGGAATGCGACCTGGTATGGGTCCAAACTTCATCTTGCCTTACCAGTTTCAGAGACAAGGACAGCCCGGGCCACGTCCTGGGATGAGGCGAGGTGGAAATTCGCAACCATTTAATAAGCAGCAGCAGTCACTGCTCCGTGGCACTGGACAAGGTTTTAGTTACATGAACAATGTACGGAATGGATTAAAGCCACCCGTCCTGCCCCCTGTTCTGCCTCAAGCCGTTGTTGGTCCAGTGATGCCTCTGACTTTTGATACTTCTGGAGTGTCTAGCTCCCCTATTGACGTCCAGCGATCAAGGGTCGTGCCTTCATCAACACTCGCTTCTGCATTAGCTTCTGCTTCACCCGAAAACCAACGTGTGATGCTCGGCGAGCAGCTGTATCCACTTGTGGAATGTCTCGAGCCAGGTCATGCAGCAAAGGTTACTGGCATGTTGCTGGAAATGGACCAACCCGAGGTCCTTCATCTCATCGAGTCACCGGATGACTTGAAGAGTAAGGTGGCTGAGGCAATGGAAGTCCTCCACAAAGCTTCATCGGAACCCGAGCTATCTGATCAGCTCGGTGCATTGGCCCTGGCCAAATGA | 1971 | 46.68 | MATPVTAPAAVATVQTAAIPPTDSVATGGGFLSSSLYVGDLDPTVDEGQLLELFSQVAQVVSIRVCRDQTGRQSLGYAYVNFSNHQEASSALKHLNFSPINGKPIRIMMSNRDPSIRKSGHANVFIKNLDASIDNKALHDTFATFGPILSCKVAIDSNGQSKGYGFVQFENEISANIAIVRLNGMLLNDKQVFVGHFIRRQERIQANGSTFTNVYVKNLLETTTADDLKNLFATHGAITSAVVMTDLKGKSKCFGFVNFQSPDSAAAAVEMLNGTILGDEKVLYVARAQKKVEREAELKAKFEQERKSRFEKLQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQNGLSKGSGFVAFSSPDEATRALNELNGKMKGRKPLFVAVAQHKEERKARLQAQFAQARAAGAISSLPSGIPGFHPGAPRLAPQQLYYGQGNPGLVPSQPAGYGFQPQLMTGMRPGMGPNFILPYQFQRQGQPGPRPGMRRGGNSQPFNKQQQSLLRGTGQGFSYMNNVRNGLKPPVLPPVLPQAVVGPVMPLTFDTSGVSSSPIDVQRSRVVPSSTLASALASASPENQRVMLGEQLYPLVECLEPGHAAKVTGMLLEMDQPEVLHLIESPDDLKSKVAEAMEVLHKASSEPELSDQLGALALAK | 656 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 18916352 | 18920011 | - | CmoCh04G025880.1 | Cmo04g02588 | 381563 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo04g02588 | 656 | CDD | RRM2_I_PABPs | 120 | 196 | IPR045305 | - | |
Cmo04g02588 | 656 | Coils | Coil | 391 | 411 | - | - | |
Cmo04g02588 | 656 | Gene3D | - | 314 | 416 | IPR012677 | - | |
Cmo04g02588 | 656 | Gene3D | - | 31 | 113 | IPR012677 | - | |
Cmo04g02588 | 656 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 34 | 112 | IPR000504 | GO:0003723 | |
Cmo04g02588 | 656 | CDD | RRM4_I_PABPs | 315 | 392 | - | - | |
Cmo04g02588 | 656 | Gene3D | - | 206 | 313 | IPR012677 | - | |
Cmo04g02588 | 656 | Pfam | Poly-adenylate binding protein, unique domain | 572 | 636 | IPR002004 | GO:0003723 | |
Cmo04g02588 | 656 | SUPERFAMILY | PABC (PABP) domain | 469 | 642 | IPR036053 | GO:0003723 | |
Cmo04g02588 | 656 | Gene3D | - | 114 | 205 | IPR012677 | - | |
Cmo04g02588 | 656 | Gene3D | - | 560 | 641 | - | - | |
Cmo04g02588 | 656 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 316 | 393 | IPR000504 | GO:0003723 | |
Cmo04g02588 | 656 | TIGRFAM | PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family | 34 | 636 | IPR006515 | GO:0003723 | |
Cmo04g02588 | 656 | SMART | rrm1_1 | 317 | 389 | IPR000504 | GO:0003723 | |
Cmo04g02588 | 656 | SMART | rrm1_1 | 213 | 286 | IPR000504 | GO:0003723 | |
Cmo04g02588 | 656 | SMART | rrm1_1 | 123 | 195 | IPR000504 | GO:0003723 | |
Cmo04g02588 | 656 | SMART | rrm1_1 | 35 | 108 | IPR000504 | GO:0003723 | |
Cmo04g02588 | 656 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 318 | 385 | IPR000504 | GO:0003723 | |
Cmo04g02588 | 656 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 124 | 191 | IPR000504 | GO:0003723 | |
Cmo04g02588 | 656 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 36 | 106 | IPR000504 | GO:0003723 | |
Cmo04g02588 | 656 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 214 | 282 | IPR000504 | GO:0003723 | |
Cmo04g02588 | 656 | SUPERFAMILY | RNA-binding domain, RBD | 313 | 404 | IPR035979 | GO:0003676 | |
Cmo04g02588 | 656 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 564 | 641 | IPR002004 | GO:0003723 | |
Cmo04g02588 | 656 | CDD | RRM1_I_PABPs | 35 | 114 | - | - | |
Cmo04g02588 | 656 | SUPERFAMILY | RNA-binding domain, RBD | 34 | 201 | IPR035979 | GO:0003676 | |
Cmo04g02588 | 656 | PANTHER | RNA BINDING PROTEIN | 34 | 644 | - | - | |
Cmo04g02588 | 656 | Coils | Coil | 285 | 305 | - | - | |
Cmo04g02588 | 656 | SUPERFAMILY | RNA-binding domain, RBD | 206 | 297 | IPR035979 | GO:0003676 | |
Cmo04g02588 | 656 | SMART | rrm2_1 | 35 | 108 | IPR003954 | GO:0003676 | |
Cmo04g02588 | 656 | SMART | rrm2_1 | 317 | 388 | IPR003954 | GO:0003676 | |
Cmo04g02588 | 656 | SMART | rrm2_1 | 123 | 195 | IPR003954 | GO:0003676 | |
Cmo04g02588 | 656 | SMART | rrm2_1 | 213 | 285 | IPR003954 | GO:0003676 | |
Cmo04g02588 | 656 | MobiDBLite | consensus disorder prediction | 477 | 504 | - | - | |
Cmo04g02588 | 656 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 122 | 194 | IPR000504 | GO:0003723 | |
Cmo04g02588 | 656 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 212 | 290 | IPR000504 | GO:0003723 | |
Cmo04g02588 | 656 | CDD | RRM3_I_PABPs | 211 | 291 | - | - | |
Cmo04g02588 | 656 | PANTHER | POLYADENYLATE-BINDING PROTEIN | 34 | 644 | - | - | |
Cmo04g02588 | 656 | SMART | poly_2 | 576 | 639 | IPR002004 | GO:0003723 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g02588 | Cmo-Chr4:18916352 | Cmo16g00375 | Cmo-Chr16:1721565 | 0 | dispersed | |
Cmo15g00576 | Cmo-Chr15:2753702 | Cmo04g02588 | Cmo-Chr4:18916352 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo04g02588 | K13126 | - | csv:101219081 | 1019.99 |