Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02588 ATGGCAACTCCAGTTACGGCACCGGCGGCTGTCGCTACAGTTCAAACGGCGGCGATTCCTCCGACTGACTCTGTCGCCACTGGAGGCGGATTCTTGAGTTCTTCATTGTATGTTGGCGATCTGGACCCGACTGTGGACGAGGGACAGCTTTTGGAACTGTTTAGCCAAGTGGCTCAGGTTGTCTCTATTAGGGTTTGCAGGGATCAGACAGGCAGGCAATCGCTTGGATACGCTTATGTTAATTTCAGCAATCATCAGGAAGCTTCCAGCGCCTTGAAACATTTGAATTTCAGCCCCATTAATGGGAAGCCTATCAGGATTATGATGTCGAATCGAGATCCTAGCATCCGAAAAAGTGGCCATGCAAATGTTTTCATCAAAAATCTGGACGCATCAATTGATAACAAGGCATTGCATGATACATTTGCTACCTTCGGTCCTATTCTTTCGTGTAAAGTTGCCATTGATAGCAATGGTCAATCAAAAGGGTATGGATTTGTGCAATTTGAAAATGAGATATCTGCAAACATTGCTATAGTTAGATTGAATGGCATGCTGCTCAATGATAAGCAAGTTTTTGTTGGACATTTTATTCGACGTCAGGAAAGGATTCAGGCAAATGGATCGACATTTACTAATGTTTATGTGAAGAATTTACTGGAAACTACCACAGCTGATGACCTAAAAAATCTTTTTGCTACACATGGTGCCATTACTAGTGCAGTTGTCATGACAGATTTGAAAGGGAAGTCCAAATGTTTTGGCTTTGTGAATTTCCAGAGCCCAGACTCTGCTGCTGCTGCAGTTGAAATGTTGAATGGTACCATCCTTGGTGATGAAAAGGTTCTGTATGTAGCCAGGGCTCAGAAGAAAGTAGAAAGGGAGGCCGAGTTGAAAGCAAAATTTGAACAGGAACGAAAGAGTAGATTTGAAAAATTACAAGGTGCTAATTTGTATATAAAAAACCTTGATGACCATATTGATGATGAGAAGCTCAAAGAGTTATTCTCTGAGTATGGAACAATCACATCATGCAAGGTTATGCTTGACCAAAATGGACTGAGCAAGGGATCTGGTTTTGTAGCATTTTCTTCACCAGATGAAGCAACGAGAGCCTTGAATGAATTGAATGGAAAAATGAAGGGAAGGAAACCTCTGTTTGTGGCTGTTGCCCAGCACAAAGAAGAGAGAAAGGCTCGGCTCCAGGCTCAATTTGCTCAAGCCAGAGCAGCTGGCGCAATATCGTCTTTGCCTTCAGGAATTCCAGGGTTTCATCCAGGTGCACCACGCCTTGCACCTCAGCAGCTGTATTATGGTCAGGGAAATCCCGGGCTGGTGCCCTCACAGCCTGCTGGATACGGCTTCCAGCCTCAACTCATGACCGGAATGCGACCTGGTATGGGTCCAAACTTCATCTTGCCTTACCAGTTTCAGAGACAAGGACAGCCCGGGCCACGTCCTGGGATGAGGCGAGGTGGAAATTCGCAACCATTTAATAAGCAGCAGCAGTCACTGCTCCGTGGCACTGGACAAGGTTTTAGTTACATGAACAATGTACGGAATGGATTAAAGCCACCCGTCCTGCCCCCTGTTCTGCCTCAAGCCGTTGTTGGTCCAGTGATGCCTCTGACTTTTGATACTTCTGGAGTGTCTAGCTCCCCTATTGACGTCCAGCGATCAAGGGTCGTGCCTTCATCAACACTCGCTTCTGCATTAGCTTCTGCTTCACCCGAAAACCAACGTGTGATGCTCGGCGAGCAGCTGTATCCACTTGTGGAATGTCTCGAGCCAGGTCATGCAGCAAAGGTTACTGGCATGTTGCTGGAAATGGACCAACCCGAGGTCCTTCATCTCATCGAGTCACCGGATGACTTGAAGAGTAAGGTGGCTGAGGCAATGGAAGTCCTCCACAAAGCTTCATCGGAACCCGAGCTATCTGATCAGCTCGGTGCATTGGCCCTGGCCAAATGA 1971 46.68 MATPVTAPAAVATVQTAAIPPTDSVATGGGFLSSSLYVGDLDPTVDEGQLLELFSQVAQVVSIRVCRDQTGRQSLGYAYVNFSNHQEASSALKHLNFSPINGKPIRIMMSNRDPSIRKSGHANVFIKNLDASIDNKALHDTFATFGPILSCKVAIDSNGQSKGYGFVQFENEISANIAIVRLNGMLLNDKQVFVGHFIRRQERIQANGSTFTNVYVKNLLETTTADDLKNLFATHGAITSAVVMTDLKGKSKCFGFVNFQSPDSAAAAVEMLNGTILGDEKVLYVARAQKKVEREAELKAKFEQERKSRFEKLQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQNGLSKGSGFVAFSSPDEATRALNELNGKMKGRKPLFVAVAQHKEERKARLQAQFAQARAAGAISSLPSGIPGFHPGAPRLAPQQLYYGQGNPGLVPSQPAGYGFQPQLMTGMRPGMGPNFILPYQFQRQGQPGPRPGMRRGGNSQPFNKQQQSLLRGTGQGFSYMNNVRNGLKPPVLPPVLPQAVVGPVMPLTFDTSGVSSSPIDVQRSRVVPSSTLASALASASPENQRVMLGEQLYPLVECLEPGHAAKVTGMLLEMDQPEVLHLIESPDDLKSKVAEAMEVLHKASSEPELSDQLGALALAK 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18916352 18920011 - CmoCh04G025880.1 Cmo04g02588 381563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02588 656 CDD RRM2_I_PABPs 120 196 IPR045305 -
Cmo04g02588 656 Coils Coil 391 411 - -
Cmo04g02588 656 Gene3D - 314 416 IPR012677 -
Cmo04g02588 656 Gene3D - 31 113 IPR012677 -
Cmo04g02588 656 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Cmo04g02588 656 CDD RRM4_I_PABPs 315 392 - -
Cmo04g02588 656 Gene3D - 206 313 IPR012677 -
Cmo04g02588 656 Pfam Poly-adenylate binding protein, unique domain 572 636 IPR002004 GO:0003723
Cmo04g02588 656 SUPERFAMILY PABC (PABP) domain 469 642 IPR036053 GO:0003723
Cmo04g02588 656 Gene3D - 114 205 IPR012677 -
Cmo04g02588 656 Gene3D - 560 641 - -
Cmo04g02588 656 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 316 393 IPR000504 GO:0003723
Cmo04g02588 656 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 34 636 IPR006515 GO:0003723
Cmo04g02588 656 SMART rrm1_1 317 389 IPR000504 GO:0003723
Cmo04g02588 656 SMART rrm1_1 213 286 IPR000504 GO:0003723
Cmo04g02588 656 SMART rrm1_1 123 195 IPR000504 GO:0003723
Cmo04g02588 656 SMART rrm1_1 35 108 IPR000504 GO:0003723
Cmo04g02588 656 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 318 385 IPR000504 GO:0003723
Cmo04g02588 656 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 191 IPR000504 GO:0003723
Cmo04g02588 656 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Cmo04g02588 656 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 282 IPR000504 GO:0003723
Cmo04g02588 656 SUPERFAMILY RNA-binding domain, RBD 313 404 IPR035979 GO:0003676
Cmo04g02588 656 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 564 641 IPR002004 GO:0003723
Cmo04g02588 656 CDD RRM1_I_PABPs 35 114 - -
Cmo04g02588 656 SUPERFAMILY RNA-binding domain, RBD 34 201 IPR035979 GO:0003676
Cmo04g02588 656 PANTHER RNA BINDING PROTEIN 34 644 - -
Cmo04g02588 656 Coils Coil 285 305 - -
Cmo04g02588 656 SUPERFAMILY RNA-binding domain, RBD 206 297 IPR035979 GO:0003676
Cmo04g02588 656 SMART rrm2_1 35 108 IPR003954 GO:0003676
Cmo04g02588 656 SMART rrm2_1 317 388 IPR003954 GO:0003676
Cmo04g02588 656 SMART rrm2_1 123 195 IPR003954 GO:0003676
Cmo04g02588 656 SMART rrm2_1 213 285 IPR003954 GO:0003676
Cmo04g02588 656 MobiDBLite consensus disorder prediction 477 504 - -
Cmo04g02588 656 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 122 194 IPR000504 GO:0003723
Cmo04g02588 656 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 290 IPR000504 GO:0003723
Cmo04g02588 656 CDD RRM3_I_PABPs 211 291 - -
Cmo04g02588 656 PANTHER POLYADENYLATE-BINDING PROTEIN 34 644 - -
Cmo04g02588 656 SMART poly_2 576 639 IPR002004 GO:0003723
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02588 Cmo-Chr4:18916352 Cmo16g00375 Cmo-Chr16:1721565 0 dispersed
Cmo15g00576 Cmo-Chr15:2753702 Cmo04g02588 Cmo-Chr4:18916352 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02588 K13126 - csv:101219081 1019.99