Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02597 ATGGAGAAGTTCCATGTTTATTCCCTGTTGATCTTTCTTTTGGTTTCAAGTCTTTTTGTTTCAACTCTGTCTCTTCCGATCGAGACTCGAGCATTGCTTCGTTTCAAAGAGAATCTCAAAGACCCGGCAGGTTTTCTTCATTCTTGGATTGATTCTGAATCCCCTTGTGGGTTCTCCGGTGTTACTTGCGACCGGTTTTCCGGGAGAGTTGTTGAGATTTCGTTGGAAAACAAGTCGCTTTCTGGTGAGATTTCTCCATCTATTTCTGTTCTGCAAAGTCTCACAACACTTTCATTGGCCTCAAACCACATTTCTGGGGTACTTCCTTATCAACTGATGAACTGTAGCAATCTTAAAGTACTGAATCTCACTGCCAACGAAATGGTTGGGAGAATTCCTGATCTTTCTCAGCTGAGAAATTTGGAGGCTTTTGATCTATCTATCAACTTTTTCTCTGGTCAATTCCCATTCTGGGTTGGGAATTTAACTGGATTGGTATCTCTTGGTCTAGGTGAAAATGAGTTTGAGACAGGTGAAATACCAGAATCTATTGGAAATTTGAAGAACTTAACTTGGCTATATCTAGCGAATGCTTATTTGAGAGGAGAAATACCAGAGTCTCTGTTTGAATTGAAGGCAATACAGACATTGGATCTTTCAAGGAACAAACTTTCTGGTAAACTCTCCAAGTCAATATCCAAGTTGAAGAATCTGAATAAGCTTGAACTTTTTGTGAACCGTTTGACTGGAGAAATCCCACCAGAGATTTCGAACCTTACCCTTCTGCAAGAAATCGATATTTCGGCAAATAATTTCTACGGGGAGTTGCCTGAAGAGGTCGGGAACCTGAGGAATTTGGTGGTTTTTCAGTCGTATGAAAACAACTTCTCTGGAAAGCTTCCTGAAGGGTTTGGAAATATGCAGAATCTTACTGCATTTTCCATCTATAGGAACAACTTTTCTGGGGAATTTCCTGTGAATTTCGGCAGATTTGCGCCTCTCGACAGTATTGACATATCAGAGAACCAATTTTCAGGTGATTTCCCCAAGTTCTTGTGTGAGAATGGGAAGTTGCAGTTCTTACTTGCTCTGGAAAATAGATTTTCAGGTGAGCTGCCACTTTCTCTAGCTGAGTGCAAATCACTGCAAAGGTTCAGAATAAGTAACAATCAAATGTCAGGCAGGATTCCAGATGAGGTTTGGGCTCTTCCTAATGCAAAAATGATTGATTTTAGTGACAATGAATTTACTGGAGTCATATCCCCAAACATTGGTTTATCAACTAGCTTGAGCCAATTGATTTTGCTAAACAATAAGTTTTCAGGTAAGCTTCCATCAGAGCTTGGCAAGTTGACAAATTTAGAAAGGCTTTACTTGAGTAACAATGACTTCAATGGAGAAATACCTTCTGAAATTGGTTTTCTCAGGCAACTTTCATCATTACACCTGGAAGTAAATTCTTTGAATGGATCAATCACACTGGAGATTGGGAATTGTGAAAGACTTGTGGACATAAATTTTGCTCACAACTCTCTTAGTGGCACTATTCCATCTTCATTTTCATTAATCAGCTCTTTGAACTCTCTGAATCTCTCAAGCAACAAACTTACAGGGATAATCCCGGAGTACTTGGAGAAAATGAAACTAAGTTCGATTGATTTGTCGGGTAATCAGCTCTTTGGAAGGGTTCCATCCAGTCTTCTGGCAATGAGTGGAGACAAAGCATTTTTGGACAACAAAGAACTCTGTGTTGATGAAAACTACAGAGAAAGGATAAAAACAAGCCTGACTACTTGTACTGGAAAGCATAGTCAAAAAGGGGTGCTAGAGGATAAACTTGTATTTTTCAGTATCATAGTCTCCATCTTGGTTTGTGTATTAGCAGGGCTAGTGTTGGTAAGTTGTAATTACTTGAAGCGCAGTGAGACAGGCTCAGAGACCAGTCAGGAAGGGGATCAACAAGGAGCTCCAAAATGGAAAATTGCATCATTTCATCAAGTGGAAATTGATGCAGATGAAATAGGCAACTTTGAAGAAGACAATTTGATAGGGAGTGGAGGAACGGGAAAAGTTTATCGGTTGGATCTGAAGAAAAACGGCAGTACGGTGGCTGTTAAGCAGCTCTGGAAAGGAGATGCAATGAAGGTGTTGGCAGCAGAAATGGAGATTTTGGGGAAGATAAGACATAGAAACATCTTGAAGCTCTATGCTTGCTTAATGAGAGAGGGATCTAGTTATCTAGTTTTTGATTACATGATTAATGGAAACCTGCGTGAAGCACTTCAAAAACAAATCAAAGGTGGGCAGCCTGAATTGGACTGGAACCAGAGGTACAGGATTGCCTTGGGGGCAGCAAGGGGAATTGCTTACTTGCATCATGATTGTTCACCGCCTATAATTCATAGAGATATAAAATCAACAAACATACTTCTAGATGGAGATTATGAACCAAAAATAGCTGATTTTGGAGTGGCAAAGGTTGCAGATCAGTTTCAAAGTGTTTCAGAGAACAGCTCTCTTGCTGGCACTCATGGTTATATTGCTCCTGAGCTAGCATATACTCCAAAAGTTTCAGAAAAGAGTGATGTGTACAGTTATGGTGTGGTGCTGTTGGAATTGATTACTGGTAGGAAAGCAATCGAAGATGAATATGGAGAAGGAAAAGATATTGTTTACTGGGTTTCAACACACCTCAATGAGCGTGATAATGTTCTCAAGCTTCTGGACGTTAAAGTTGCATCTGAAGTCGTCCAAAATGACATGATTAAAGTCCTGAAGATTGCTGTACTTTGCACAACAAAGCTTCCATCACTTCGCCCTTCTATGAGAGAGGTAGTGAAGATGCTATTAGACGCTGATCCTTACTCTTCTTCAATGCCCCTGAAAAACAGTTCAACTAAAAAACATTTCGTTTAG 2916 39.99 MEKFHVYSLLIFLLVSSLFVSTLSLPIETRALLRFKENLKDPAGFLHSWIDSESPCGFSGVTCDRFSGRVVEISLENKSLSGEISPSISVLQSLTTLSLASNHISGVLPYQLMNCSNLKVLNLTANEMVGRIPDLSQLRNLEAFDLSINFFSGQFPFWVGNLTGLVSLGLGENEFETGEIPESIGNLKNLTWLYLANAYLRGEIPESLFELKAIQTLDLSRNKLSGKLSKSISKLKNLNKLELFVNRLTGEIPPEISNLTLLQEIDISANNFYGELPEEVGNLRNLVVFQSYENNFSGKLPEGFGNMQNLTAFSIYRNNFSGEFPVNFGRFAPLDSIDISENQFSGDFPKFLCENGKLQFLLALENRFSGELPLSLAECKSLQRFRISNNQMSGRIPDEVWALPNAKMIDFSDNEFTGVISPNIGLSTSLSQLILLNNKFSGKLPSELGKLTNLERLYLSNNDFNGEIPSEIGFLRQLSSLHLEVNSLNGSITLEIGNCERLVDINFAHNSLSGTIPSSFSLISSLNSLNLSSNKLTGIIPEYLEKMKLSSIDLSGNQLFGRVPSSLLAMSGDKAFLDNKELCVDENYRERIKTSLTTCTGKHSQKGVLEDKLVFFSIIVSILVCVLAGLVLVSCNYLKRSETGSETSQEGDQQGAPKWKIASFHQVEIDADEIGNFEEDNLIGSGGTGKVYRLDLKKNGSTVAVKQLWKGDAMKVLAAEMEILGKIRHRNILKLYACLMREGSSYLVFDYMINGNLREALQKQIKGGQPELDWNQRYRIALGAARGIAYLHHDCSPPIIHRDIKSTNILLDGDYEPKIADFGVAKVADQFQSVSENSSLAGTHGYIAPELAYTPKVSEKSDVYSYGVVLLELITGRKAIEDEYGEGKDIVYWVSTHLNERDNVLKLLDVKVASEVVQNDMIKVLKIAVLCTTKLPSLRPSMREVVKMLLDADPYSSSMPLKNSSTKKHFV 971
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18978819 18983384 + CmoCh04G025970.1 Cmo04g02597 381572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02597 971 ProSitePatterns Protein kinases ATP-binding region signature. 683 706 IPR017441 GO:0005524
Cmo04g02597 971 PRINTS Leucine-rich repeat signature 214 227 - -
Cmo04g02597 971 PRINTS Leucine-rich repeat signature 523 536 - -
Cmo04g02597 971 Pfam Leucine rich repeat N-terminal domain 28 64 IPR013210 -
Cmo04g02597 971 Gene3D Ribonuclease Inhibitor 26 177 IPR032675 -
Cmo04g02597 971 Gene3D Ribonuclease Inhibitor 363 468 IPR032675 -
Cmo04g02597 971 Pfam Protein kinase domain 677 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g02597 971 Gene3D Ribonuclease Inhibitor 469 590 IPR032675 -
Cmo04g02597 971 SUPERFAMILY RNI-like 246 566 - -
Cmo04g02597 971 Gene3D Ribonuclease Inhibitor 178 358 IPR032675 -
Cmo04g02597 971 ProSiteProfiles Leucine-rich repeat profile. 525 546 IPR001611 GO:0005515
Cmo04g02597 971 Gene3D Transferase(Phosphotransferase) domain 1 752 965 - -
Cmo04g02597 971 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 8 961 - -
Cmo04g02597 971 ProSiteProfiles Protein kinase domain profile. 677 956 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g02597 971 SMART serkin_6 677 956 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g02597 971 SMART LRR_typ_2 187 211 IPR003591 -
Cmo04g02597 971 SMART LRR_typ_2 91 114 IPR003591 -
Cmo04g02597 971 SMART LRR_typ_2 523 546 IPR003591 -
Cmo04g02597 971 SMART LRR_typ_2 451 475 IPR003591 -
Cmo04g02597 971 SMART LRR_typ_2 259 283 IPR003591 -
Cmo04g02597 971 Pfam Leucine Rich Repeat 453 475 IPR001611 GO:0005515
Cmo04g02597 971 Pfam Leucine Rich Repeat 215 235 IPR001611 GO:0005515
Cmo04g02597 971 ProSitePatterns Serine/Threonine protein kinases active-site signature. 799 811 IPR008271 GO:0004672|GO:0006468
Cmo04g02597 971 SUPERFAMILY Protein kinase-like (PK-like) 671 949 IPR011009 -
Cmo04g02597 971 SUPERFAMILY L domain-like 54 302 - -
Cmo04g02597 971 PANTHER RECEPTOR PROTEIN-TYROSINE KINASE CEPR2 8 961 - -
Cmo04g02597 971 Pfam Leucine rich repeat 502 559 IPR001611 GO:0005515
Cmo04g02597 971 Gene3D Phosphorylase Kinase; domain 1 647 751 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02597 Cmo-Chr4:18978819 Cmo09g00599 Cmo-Chr9:2974990 0 dispersed
Cmo15g00563 Cmo-Chr15:2676626 Cmo04g02597 Cmo-Chr4:18978819 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74316 PF00069 Pkinase 1.00E-46 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02597 - - csv:101215749 1622.06