Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02607 ATGGGAGAAGTGGATAACAACAAAAGCCTCAGCACCGTCACTTCGTCTCTCTCTCTCTCTCTCTTTGTGCTGTGTTTGAAAAGTTTGAGCGGTGAGGAAGAGGATTTTCAATGGATTTCGGAAGAGATCAATCCATCCACCACCAATTGGTTTCAAGCCAACGATAGTGAGGTTATTCCAATGATGAACACCATGGGAATCTTTGAAGATATTGGCTTTTGCCAAAATCTTGAATATTTTTCGGCTCCTTCTGGGGAACAAGAGACGGGTCGGGAGCATGAAGGAGAGGCTACTTTGGAGGAAGATTATAGCGATGAAGAGCTGGATGTTGACGAACTTGAGAGAAGGATGTGGCGTGATCGGATGCTTTTGAGGCGACTCAAAGAACAAAGCAAAGAGAAGGAAGGGGATGATAATTCAAAGCAGCGTCAATCCCAGGAGCAAGCCCGAAGGAAGAAGATGTCTCGGGCTCAAGACGGTATCCTGAAATATATGTTGAAAATGATGGAGGTTTGTAAAGCTCAAGGTTTCGTTTATGGGATCATTCCTGAGAAAGGAAAGCCAGTGAGTGGAGCTTCTGATAATCTTCGTGCCTGGTGGAAAGAACGAGTCAGATTCGATAGAAATGGCCCAGCAGCCATTACCAAATATCAGGCTGATCATGCAATTCCTGGGATCAATGATGACTGCAATACAGTGACATCCACCCCCCACACTTTACAAGAGCTCCAAGATACAACCCTTGGATCACTTTTGTCTGCTCTGATGCAGCACTGTGATCCACCCCAGCGTCGTTTTCCATTAGAGAAGGGAGTTTCCCCACCGTGGTGGCCTACTGGAAACGAGGAATGGTGGCCTGAATTGGGATTACCCAAGGACCAGGGGCCTCCCCCTTATAAGAAGCCCCATGATCTGAAGAAGGTTTGGAAAGTTAGCGTTCTCACTGCTGTGATTAAGCACATGTCGCCCGACATTGCCAAGATTCGCAAGCTTGTTCGTCAGTCTAAATGTTTGCAAGACAAGATGACTGCAAAAGAGAGTGCTACATGGCTGGCCATTGTAAACCAGGAAGAAGCCTTGGCCAGGAAATTGTATCCTGATAGATGCCCACCTGTGTCGATCTGTGGGAGCGGATCTCTTTTAATCAGTGACAGTAGCGATTACGATGTTGAAGTAGTGGAAGACGAACCAAATATCGAAACAGAGGAAAGGAAGCCTCATGATCTCAATTTCTTTAATATGGGGGCTCCTGGACCTAGAGAGAGGCCAATGATGCCACCATTGGGACCTCAGATAAAGGAAGAACTCATGGAGAACAGTTCAAACTTTATTCAAAAGAGGACTCTGATTACTGATGAGTCAAGTACAATGATGCCTCAGAAGATATATACTTGTGAATATTCTCAATGCCCATATAACAGCTCGCGCCTCGGGTTTCTCGACAGGTCTTCGAGAAACAACCACCAGTTGAACTGCCCATTTAGGAGTGATTCTTCCCCAATATTTGGCATCCCAAACTTTCTAACTAACGATGATAAATCATCTCCAGTTCTTCCCTCCTTTAACCATTCCAAGCCTCCTAGCCGGCCTATGAACCCAACTCCACCCCTCAGAGTATCAGGCCTTGGACTTCCAGACGACGACCAGAAAATGATCACTGACCTTCTAAGTTTCTACGATTCTAACCATCAACAGGACAAGATTTTGAATTCCGGGAACGTCGAAGCAAGAGCCGATCACAACCAACAGCTGCCAAAATTCCAACTCCAAGTTGATGATAACTTGTATTGCCAAGGAGCAATGGTGGGGGGAAGTAGCATGCCAATGCAGCTCCCTGATTTCTCTTCCACAAAAGTCCCATTTGACGAATACAAGACGTTCGATTCTCCTTTCGGCATGTATCCTAACGATAACATTCCCGACTTCAGATTTGGTTCTCCCTTTAACTTGGCATCAATCGATTACCCAGTAGACCCACCGTTGCCAAAGCAAGATACACAATTGTGGTACCTTTGA 2016 45.78 MGEVDNNKSLSTVTSSLSLSLFVLCLKSLSGEEEDFQWISEEINPSTTNWFQANDSEVIPMMNTMGIFEDIGFCQNLEYFSAPSGEQETGREHEGEATLEEDYSDEELDVDELERRMWRDRMLLRRLKEQSKEKEGDDNSKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVSGASDNLRAWWKERVRFDRNGPAAITKYQADHAIPGINDDCNTVTSTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPTGNEEWWPELGLPKDQGPPPYKKPHDLKKVWKVSVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIVNQEEALARKLYPDRCPPVSICGSGSLLISDSSDYDVEVVEDEPNIETEERKPHDLNFFNMGAPGPRERPMMPPLGPQIKEELMENSSNFIQKRTLITDESSTMMPQKIYTCEYSQCPYNSSRLGFLDRSSRNNHQLNCPFRSDSSPIFGIPNFLTNDDKSSPVLPSFNHSKPPSRPMNPTPPLRVSGLGLPDDDQKMITDLLSFYDSNHQQDKILNSGNVEARADHNQQLPKFQLQVDDNLYCQGAMVGGSSMPMQLPDFSSTKVPFDEYKTFDSPFGMYPNDNIPDFRFGSPFNLASIDYPVDPPLPKQDTQLWYL 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19007185 19010640 - CmoCh04G026070.1 Cmo04g02607 381582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02607 671 MobiDBLite consensus disorder prediction 84 106 - -
Cmo04g02607 671 Gene3D - 143 223 IPR023278 GO:0003700|GO:0005634
Cmo04g02607 671 Gene3D - 235 368 IPR023278 GO:0003700|GO:0005634
Cmo04g02607 671 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 65 670 IPR006957 GO:0005634
Cmo04g02607 671 MobiDBLite consensus disorder prediction 129 155 - -
Cmo04g02607 671 MobiDBLite consensus disorder prediction 513 534 - -
Cmo04g02607 671 Pfam Ethylene insensitive 3 111 358 IPR006957 GO:0005634
Cmo04g02607 671 PANTHER ETHYLENE INSENSITIVE 3-LIKE 1 PROTEIN 65 670 - -
Cmo04g02607 671 SUPERFAMILY DNA-binding domain of EIN3-like 237 361 IPR023278 GO:0003700|GO:0005634
Cmo04g02607 671 Coils Coil 96 130 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02607 Cmo-Chr4:19007185 Cmo10g01026 Cmo-Chr10:5388347 0 dispersed
Cmo15g00557 Cmo-Chr15:2663581 Cmo04g02607 Cmo-Chr4:19007185 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9723 PF04873 EIN3 8.90E-131 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02607 K14514 - csv:101214396 1033.48