Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02610 ATGGGGATTCAAACGATGGGGTCTGAAGGCGGAGGTGATCCGAATGGCAAACAATCGCAATTGGAGCCATTGGTTCGACAAAACTCGCTATATAGTCTCACTTTGGATGAGGTCCAAAACCAGTTGGGTGATCTAGGAAAGCCATTAATCAGTATGAATCTTGATGAGCTTCTTAAGAATGTGTGGACCGCTGAGGCTAACCAAAACGTCGGTAAGGACAATGAAGACAATACTGTTTTGTCGAACCTAACGCCCCAACAACGTCAGGGTAGTCTCACGTTGAATGGTGCTCTAAGTAAAAAGACGGTTGACGAGGTGTGGAGAGACATTCAACAAAGCAAAGATAGTGAGGAGAAGAAGTCTTGTGAACGACAACCTACGTTGGGAGAGATGACATTGGAAGATTTTCTGGTTAAAGCCGGGGTCGTTGCTGAGACGTCACCGAATAAGAAAGGTGCAGGTCCTGTTGTTGAAGTCGACGCAAACATCACACCACAGTTCCCCCAACAAGGACAGTGGATGCAGTTCCCCCAAGTTCAATATCAGCCTCAACAAACAGCAATGATGGGGGTTTACATGCCGAGCCAGCCTATTCCCCAGCCGATGCACGTCGGGGCTGGCACCGTGATAGATGGTCCATATGTAGACAATCAGTTGGCATTGCCAACGCCATTGGTCGGAGCGTTATCTGACACACAGACATCTGGAAGGAAAAGGGGAGCGTCTGAAGACATGATCGAGAAAACTGTCGAGCGTAGACAGAAAAGGATGATAAAGAATCGGGAATCTGCCGCTCGTTCACGAGCAAGGAAGCAGGCTTATACCAATGAACTGGAGAACAAAGTTTCGCGTTTGGAAGAGGAAAACGAAAGGCTCAGGAAACGTAAGGCGGTACTTTTAAGTTTTCTACATTGCTACCCGTCTTATGATTTACTAGATTCTGTAGGGTTCTTAACGAAGTATAAGGATGAACGCACGGAGTTTGTTTTACCTGTAGGAGATGGAAAATTTGCTACCATCGACCCCCTCGCCCGAGCCGAAGTATCAGCTTCGAAGAACATCGTCAGCGCGGTTCTAACTTGGAGCTCGGCTTCTCTTCCTCATAAACTGTATGGTTGGTTCTTGATAGTTTGTTTTTTATGCACTCAAGTTTTCTCGATTCGGAGATCAAATTCTGCCACCGGTTTTTGTTTTGCATTTTTGGGAATTTATTTCTGCTGTCGGAATCGTGAAATTTTCTCCACAGAAATGTCGGCTTCGACCGTGTCGATAACGGCGAATCCGGCGGTGCGGAGGAGGCCGGTGTTGGTTTCGGAGAAGAAGGGGGCTAGTATTGAATTGTTGGCAACGGATGGCGCGAATCCTCTTTCGAATACCGCTACTGCTGGAACTGGTGGTGCGGCCGATGATAAGGTCGCCGGTGGAATTGGTAGGGATATGAGCCATCACTCGATTAGAGGTGAGGTTGTTCTTGAGCGGTCATCTAGGGATCCACTTCAGATCAAGAAAACTGTTGCGAATTCCACCATTTCGCCGCGGCGGAGTAGAAAGGCGATTACGAAGCCGGAGAAGCCTCGATGGGCGACTATTCTTAGCGTGGTTACGAAGAATATTGTGCTTTTGATGGTTCTTCTAGGGTTGGTTCAAATGATTAGGAAATTAGCCCTAAAATCAGGGGATGGTGCGGTGGGAAATCAAATGGGGTTTTCAGAAGTTGAGGGACGGATTGCAGAAGTTGAAGCATTCTTGAAAACTACCACCAAGATGATTCAGGTGCAGGTGGAGGTCGTCGATCGGAAGATCGAGAACGAAGTTGGGGGATTGAGAAGGGAAGTTGACCATAAGATTGAGGCAAAAACTGCTGATCTTGAGAGCGGTTTGAAGGTGCTACAGGATAAAGGGGAGGACCTGGAAAGGTCTTTGAGCGAGTTAACGGCCGTGGATTGGTTGTCGAAGCAAGAATTCGATAGGATTTACGACGAATTGAAGAAGGCGAAGAGCGGTGAAATTGATGAGCGGTTTGCAAATTTGGATGATATAAGAGCCTATGCAAGGGAGGTGGTTGAGATGGAGATTGAGAAGCATGCGGCTGATGGACTTGGTAGGGTGGATTATGCTCTTGCTTCTGGTGGGGCTATGGTTGTAAAGCATTCCGAGCCGTTTACAGGAAGAACAAGTAACTGGTTTTCGAGAAATGCAAGGAATGGAGTTCATAGTAATGCGAATAAGATGCTGAAACCGAGTTTCGGGGAGCCCGGGCAGTGCTTCCCCTTGAAAGGAAGTAGCGGGTTCGTTCAAATTAGGCTACGGACGGCGATCGTTCCAGAAGCTATTACTCTAGAGCATGTTGCCAAGAGCGTAGCATACGATAGATCAAGCGCGCCTAAGGCGTGCAGGGTATCTGGGTGGTTTCAAGGGGACGACGTTGCTGCCTCAGCTGCCAATGCTGAGAAGATGTTTCTCTTGGCCGAGTTCACATACGATCTCGAAAAGAGCAATGCACAGACATTCAACGTGGTGGAGACAACAGGCTCCGGACTCGTTGACATGATCCGATTAGATTTCTCATCCAACCATGGAAGCCCGTCGCACACTTGCATCTACCGCGTGAGAGTTCACGGTCACGAACCGTATTCTGTTTCTATGATGGCAACGCAGTCGTGA 2664 48.05 MGIQTMGSEGGGDPNGKQSQLEPLVRQNSLYSLTLDEVQNQLGDLGKPLISMNLDELLKNVWTAEANQNVGKDNEDNTVLSNLTPQQRQGSLTLNGALSKKTVDEVWRDIQQSKDSEEKKSCERQPTLGEMTLEDFLVKAGVVAETSPNKKGAGPVVEVDANITPQFPQQGQWMQFPQVQYQPQQTAMMGVYMPSQPIPQPMHVGAGTVIDGPYVDNQLALPTPLVGALSDTQTSGRKRGASEDMIEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKRKAVLLSFLHCYPSYDLLDSVGFLTKYKDERTEFVLPVGDGKFATIDPLARAEVSASKNIVSAVLTWSSASLPHKLYGWFLIVCFLCTQVFSIRRSNSATGFCFAFLGIYFCCRNREIFSTEMSASTVSITANPAVRRRPVLVSEKKGASIELLATDGANPLSNTATAGTGGAADDKVAGGIGRDMSHHSIRGEVVLERSSRDPLQIKKTVANSTISPRRSRKAITKPEKPRWATILSVVTKNIVLLMVLLGLVQMIRKLALKSGDGAVGNQMGFSEVEGRIAEVEAFLKTTTKMIQVQVEVVDRKIENEVGGLRREVDHKIEAKTADLESGLKVLQDKGEDLERSLSELTAVDWLSKQEFDRIYDELKKAKSGEIDERFANLDDIRAYAREVVEMEIEKHAADGLGRVDYALASGGAMVVKHSEPFTGRTSNWFSRNARNGVHSNANKMLKPSFGEPGQCFPLKGSSGFVQIRLRTAIVPEAITLEHVAKSVAYDRSSAPKACRVSGWFQGDDVAASAANAEKMFLLAEFTYDLEKSNAQTFNVVETTGSGLVDMIRLDFSSNHGSPSHTCIYRVRVHGHEPYSVSMMATQS 887
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19022595 19029673 - CmoCh04G026100.1 Cmo04g02610 381585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02610 887 CDD bZIP_plant_BZIP46 252 301 - -
Cmo04g02610 887 Pfam Sad1 / UNC-like C-terminal 738 875 IPR012919 -
Cmo04g02610 887 MobiDBLite consensus disorder prediction 1 20 - -
Cmo04g02610 887 PANTHER SAD1/UNC-84-LIKE PROTEIN-RELATED 419 884 IPR045119 GO:0005639
Cmo04g02610 887 Pfam bZIP transcription factor 252 295 IPR004827 GO:0003700|GO:0006355
Cmo04g02610 887 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 255 270 IPR004827 GO:0003700|GO:0006355
Cmo04g02610 887 Gene3D - 250 303 - -
Cmo04g02610 887 SMART brlzneu 248 305 IPR004827 GO:0003700|GO:0006355
Cmo04g02610 887 SUPERFAMILY Leucine zipper domain 252 303 IPR046347 GO:0003700|GO:0006355
Cmo04g02610 887 PANTHER SUN DOMAIN-CONTAINING PROTEIN 1-LIKE 419 884 - -
Cmo04g02610 887 ProSiteProfiles SUN domain profile. 709 877 IPR012919 -
Cmo04g02610 887 Gene3D - 681 876 - -
Cmo04g02610 887 Coils Coil 627 647 - -
Cmo04g02610 887 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 250 299 IPR004827 GO:0003700|GO:0006355
Cmo04g02610 887 Coils Coil 268 295 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02568 Cmo-Chr4:18794775 Cmo04g02610 Cmo-Chr4:19022595 1.60E-21 dispersed
Cmo04g02610 Cmo-Chr4:19022595 Cmo10g01043 Cmo-Chr10:5495297 3.47E-61 dispersed
Cmo12g00499 Cmo-Chr12:3067064 Cmo04g02610 Cmo-Chr4:19022595 1.16E-43 dispersed
Cmo15g00598 Cmo-Chr15:2909179 Cmo04g02610 Cmo-Chr4:19022595 1.26E-16 dispersed
Cmo09g00642 Cmo-Chr9:3211492 Cmo04g02610 Cmo-Chr4:19022595 1.18E-19 transposed
Cmo15g00553 Cmo-Chr15:2645245 Cmo04g02610 Cmo-Chr4:19022595 0 transposed
Cmo15g00552 Cmo-Chr15:2641308 Cmo04g02610 Cmo-Chr4:19022595 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9724 PF07738 Sad1_UNC 2.70E-36 CL0202 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02610 K19347 - csv:101214156 756.518