Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02652 ATGGCGGAAGGGCTGCTGATCACTTCCCAAATGGGTCTCTTTTGGCACCAAACCACTGCCCCTTTGATTGCACCATTTTTGAAGCTCTCTGTGGCTGCCTGTTTGGCCATGTCCTTAATGCTCTTCTTTGAAAGAGTTTATATGGGCATTGTCATTCTCTTTGTTAAGCTCTTTAGAAAAAAACCCCACAAAACTTACAAGTGGGAGCCCATTAAAGATGATCTTGAGCTTGCCCATTTTGCTTATCCCATGGTTTTGGTTCAAATTCCTATGTACAATGAGCGAGAGGTTTATCAATTATCAATCGGAGCAGCGTGTGGACTTTCGTGGCCATCTAATAGAATCATAATTCAAGTTCTCGATGATTCTACCGATTCTTCTATCAAGGATCTGGTGGAATTAGAGTGCAAAAGATGGGCAAGCAAAGGGATAAACATAAAGTATGAGATTAGAGACAACAGAAATGGGTATAAAGCAGGGGCGCTAAAAGAGGGAATGAAGCACAACTACGTTAAACTCTGCGATTATGTTGCTATTTTCGATGCCGATTTCCAACCTGATCCTGATTTTCTTTGGCGCACCATTCCATTTCTCACGAACAATCCCGAAATCGCTCTTGTTCAAGCTCGCTGGAAGTTCGTGAACTCTGATGAATGTTTGATGACGAGAATGCAAGAGATGTCATTAGATTACCATTTCAAAGTGGAGCAAGAAGTTGGTTCTGCTACTCATGCATTTTTTGGGTTCAATGGCACAGCAGGTGTTTGGAGAATTGCCGCACTGAACGAGGCTGGTGGATGGAAGGATCGGACGACTGTTGAAGATATGGATTTGGCTGTTCGAGCTAGCCTCAAAGGCTGGAAGTTCGTCTATGTTGGCGATCTTAAGGTGAAGAACGAGTTGCCGAGTACCTTCAAAGCCTATCGATATCAGCAACACCGATGGTCTTGCGGTCCGGCTAACCTTTTCAAAAAGATGGTTATTGAAATCATGAAGAACAAGAAAGTCTCCATGTGGAAGAAGCTTTACCTGATCTATAGCTTCTTCTTTGTTCGGAAGATCGTTGCCCACATCGTCACGTTTGTCTTTTATTGTGTTGTTTTGCCTGCTACGGTCTTGGTTCCTGAAGTGTCGGTGCCGAGATGGGGTGCCATTTATATTCCTTCGACGATCACACTCCTTAACGCCGTTGGAACTCCGAGATCATTCCACCTGATCATTTTCTGGATTCTCTTCGAGAACGTCATGTCACTACACCGAACGAAGGCAACATTCATCGGTCTATTCGAAGCAGGGAGAGTAAACGAATGGGTCGTCACCGAGAAACTAGGGGATGCGCTAAAGACTAAACCGGGTTCCAAAGCTCCACGAAAACCTCGTCTTAGGATTGGGGAAAGACTCCATGTTCTTGAGCTTTGTGTTGGAGCCTACCTCTTCTTCTGCGGCTGCTACGATCTGAACTTCGGAAAGAATCAATACTTCATCTACCTCTTCCTACAATCATTCGCATTCTTCATCGCCGGGGTCGGCTACGTTGCCGAAAACTCCGATTCTTTCTCCGATCTCCGCTGCACCGTCACGCCACCTCTGATTGCTTACTTGTCTCCCATCTCCTTCTCTGTCGCTGCCGTCGCCTGCGCGCCTCCATATCTCCCGCTCTGCTGCAACCTCAGACCGTCATTCCTAGGGTTCCCAACAGAGCGCGAATATTTGGTTCCAAGGCTGCCCTCTCCGGCTACTCCTCTCACTCGTAACCCTAATTCTCAATTCAGTAGTGTCTTCAGGGAAAGGAGATTACGCGTGCAAGGGAAGGCTATGGCTTTAACAGCCCCAGGGCAGCTCAATGTTAACGAGTCCCCTTCGTGGGGATCTAGAGGTGTCGACTGCTTCGAAAAACTGGAGCAGATTGGTGAAGGCACTTATGGTCAAGTTTACATGGCCAGAGAATTGAGAACAGGTGAAATAGTTGCACTCAAGAAAATACGAATGGATAATGAGAGGGAGGGGTTCCCTATTACTGCCATTCGAGAAATCAAAATTCTAAAGAAGCTTCACCATGAAAATGTAATCAAATTGAAAGAGATTGTGACATCTCCAGGTCCTGAGAAGGATGAACAAGGGAAGCCAGATGGTAACAAGTACAAGGGTGGCATCTACATGGTTTTCGAGTACATGGACCATGATTTGACAGGTCTTGCTGATCGTCCAGGGATGAGGTTTTCAGTTCCCCAAATCAAGTGCTACATGAGGCAGCTTCTCACAGGGCTTCACTATTGTCATGTAAATCAAGTATTGCATAGGGATATAAAAGGCTCAAATCTGCTTATTGACAATGAAGGAAATCTGAAGCTTGCAGATTTTGGGCTTGCCCGATCATTTTCTAATGATATCAATGCAAATCTAACAAATCGTGTCATTACCTTATGGTATAGACCTCCTGAATTGCTTCTTGGATCGACAAAATATGGTCCAGCTGTAGACATGTGGTCTGTTGGTTGTATTTTTGCAGAGCTTCTACATGGGAAGCCAATATTCCCTGGCAAGGACGAGCCGGAACAATTAAATAAGATCTTTGAGCTATGTGGCGCTCCGGATGAAGTCAATTGGCCCGGGGTTTCTAAAATCCCATGGTACAACAATTTCAAGCCCACAAGGCCGATGAAGAGACGTCTTAGAGAAGTTTTCAGGCATTTTGATCGTCATGCTTTAGAGCTGTTGGAGAAGATGCTCACTCTTGATCCTTCTCAGAGGATATCTGCTAAGGATGCTCTAGATGCGGAGTATTTTTGGACAGACCCATTGCCTTGTGACCCTAAGAGTTTGCCAAAGTACGAATCATCACACGAGTTCCAGACGAAGAAGAAGCGTCAGCAGCAACGACAACATGAAGAAACTGCAAAGAGACAGAAGTTGCAACACCAGCAGCATTCACGCCTCCCACCTATACAGCAGTCGGGACAAGCTCATGCACAGATGCGACCAGTACCTAACCAACCCCTTCATGGTTCTCAACCCCCCGTTGCTGCAGGGCCTAGCCATCATTTTGGTGGGAAGCCTCGTGGACCCCCAGGTCCTGGTAGGTATCCCTCTGGTGGAAATCCTCCTTCTGGATACAACCACCCAAGTCGTGGTGGTCAAAGTGGGGGTTCTTATGGCAATGCACAATACGCTCAAGGACGAGGTGCACCATATGGTTCTGGTAATATGTCTGGTGCTGGTCCTCGAGGCGGAGCTGGAGCCGGTGGTGGTGGTTATGGCGCGGGAGCTCCAAATTACCCACAGAATGGTCCATATGCTGGTAGTTCTGGTACTGGGCGTGGCTCCAATGTAATGGGCGGAAACCGAAACCAACAATATGGATGGCAACAATGA 3372 46.59 MAEGLLITSQMGLFWHQTTAPLIAPFLKLSVAACLAMSLMLFFERVYMGIVILFVKLFRKKPHKTYKWEPIKDDLELAHFAYPMVLVQIPMYNEREVYQLSIGAACGLSWPSNRIIIQVLDDSTDSSIKDLVELECKRWASKGINIKYEIRDNRNGYKAGALKEGMKHNYVKLCDYVAIFDADFQPDPDFLWRTIPFLTNNPEIALVQARWKFVNSDECLMTRMQEMSLDYHFKVEQEVGSATHAFFGFNGTAGVWRIAALNEAGGWKDRTTVEDMDLAVRASLKGWKFVYVGDLKVKNELPSTFKAYRYQQHRWSCGPANLFKKMVIEIMKNKKVSMWKKLYLIYSFFFVRKIVAHIVTFVFYCVVLPATVLVPEVSVPRWGAIYIPSTITLLNAVGTPRSFHLIIFWILFENVMSLHRTKATFIGLFEAGRVNEWVVTEKLGDALKTKPGSKAPRKPRLRIGERLHVLELCVGAYLFFCGCYDLNFGKNQYFIYLFLQSFAFFIAGVGYVAENSDSFSDLRCTVTPPLIAYLSPISFSVAAVACAPPYLPLCCNLRPSFLGFPTEREYLVPRLPSPATPLTRNPNSQFSSVFRERRLRVQGKAMALTAPGQLNVNESPSWGSRGVDCFEKLEQIGEGTYGQVYMARELRTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEKDEQGKPDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFSVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNDINANLTNRVITLWYRPPELLLGSTKYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKIPWYNNFKPTRPMKRRLREVFRHFDRHALELLEKMLTLDPSQRISAKDALDAEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQRQHEETAKRQKLQHQQHSRLPPIQQSGQAHAQMRPVPNQPLHGSQPPVAAGPSHHFGGKPRGPPGPGRYPSGGNPPSGYNHPSRGGQSGGSYGNAQYAQGRGAPYGSGNMSGAGPRGGAGAGGGGYGAGAPNYPQNGPYAGSSGTGRGSNVMGGNRNQQYGWQQ 1123
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19276697 19289508 - CmoCh04G026520.1 Cmo04g02652 381627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02652 1123 CDD CESA_CaSu_A2 83 319 - -
Cmo04g02652 1123 Gene3D Phosphorylase Kinase; domain 1 617 726 - -
Cmo04g02652 1123 MobiDBLite consensus disorder prediction 942 971 - -
Cmo04g02652 1123 MobiDBLite consensus disorder prediction 1035 1054 - -
Cmo04g02652 1123 Pfam Protein kinase domain 630 929 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g02652 1123 CDD STKc_CDK9_like 630 929 - -
Cmo04g02652 1123 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 75 298 IPR029044 -
Cmo04g02652 1123 MobiDBLite consensus disorder prediction 940 1123 - -
Cmo04g02652 1123 SMART serkin_6 630 929 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g02652 1123 ProSitePatterns Serine/Threonine protein kinases active-site signature. 764 776 IPR008271 GO:0004672|GO:0006468
Cmo04g02652 1123 ProSitePatterns Protein kinases ATP-binding region signature. 636 659 IPR017441 GO:0005524
Cmo04g02652 1123 PANTHER BNAC09G36340D PROTEIN 7 570 - -
Cmo04g02652 1123 MobiDBLite consensus disorder prediction 975 992 - -
Cmo04g02652 1123 SUPERFAMILY Nucleotide-diphospho-sugar transferases 83 353 IPR029044 -
Cmo04g02652 1123 MobiDBLite consensus disorder prediction 1095 1123 - -
Cmo04g02652 1123 ProSiteProfiles Protein kinase domain profile. 630 929 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g02652 1123 Coils Coil 954 974 - -
Cmo04g02652 1123 Pfam Glycosyl transferase family group 2 176 366 IPR001173 -
Cmo04g02652 1123 PANTHER - 7 570 - -
Cmo04g02652 1123 SUPERFAMILY Protein kinase-like (PK-like) 627 937 IPR011009 -
Cmo04g02652 1123 Gene3D Transferase(Phosphotransferase) domain 1 727 969 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01392 Cmo-Chr2:8250569 Cmo04g02652 Cmo-Chr4:19276697 0 dispersed
Cmo04g02652 Cmo-Chr4:19276697 Cmo06g00434 Cmo-Chr6:2086987 0 dispersed
Cmo05g00082 Cmo-Chr5:327174 Cmo04g02652 Cmo-Chr4:19276697 1.65E-86 dispersed
Cmo20g00018 Cmo-Chr20:154242 Cmo04g02652 Cmo-Chr4:19276697 0 transposed
Cmo15g00491 Cmo-Chr15:2236016 Cmo04g02652 Cmo-Chr4:19276697 0 wgd
Cmo20g00575 Cmo-Chr20:2813782 Cmo04g02652 Cmo-Chr4:19276697 0 wgd
Cmo04g02652 Cmo-Chr4:19276697 Cmo07g00905 Cmo-Chr7:4323780 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74319 PF00069 Pkinase 8.70E-74 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02652 K13680 K08819 csv:101211547 985.326