Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02667 ATGTTTGCTGCCATTGCCATTCTGTTGTTCAGCTGGTTTTTGAGCTCCTCTCTGCCTTCTATGGCAGCTTTCAGTTTCAATCTCACTGACCCACATCTTCTTCCAGATCCTGAAACTGTTGCTTATGAAGTTCAGAGGCTTTGTCCAGAACATGCCTCTAATGGGGTTCTGCAGTTGTTCTTGTTTAGGCATTTTAACAAACACCTTGTGTGCATTGTTGTTCTGCTCAAAGGTGCAGTCCCCTGCTTCAATGGCTTCCTTCCCACTAATTTGGTGATATCTATGAGTGTGAATGATTCATTTTCAAGAAGGGAAATGCTGTCGATTCATTCTAAAGGTCAATCGAATTCCTGTCAAACTGGAAACCCTATCGATGATTGTTGGCGCTGCGGTTCGAACTGGCAAGACAATCGCCAACGGCTTGCAGATTGCAGCATTGGATTTGGCCGAAACGCCATGGGAGGTAAAGGAGGTCAGATCTACATAGTTACAGATTCCTCCGACTCCGACCCTGTAAACCCTCGCCCTGGAACTCTCCGCTACGCTGTGGTTCAAGATGAACCTCTCTGGATCGTCTTTGCTGCAGACATGACTATCAAACTCAAGTACGAACTCATGATGAACAGTTACAAAACCCTAGATGGCCGCGGCGCAAATGTCCACATAACCGGCGGCGGTTGCATCACACTTCAGTACATCTCGAATGTAATCATCCACAACATCAACATTCATCACTGTATCCCTACCGGTCACACTAACGTCCGATCAAGCCCTACGCACGTCGGATACAGAGGAAAGTCCGACGGCGATGGAATCTCAATCTTCAGCTCGCGCAACATCTGGATCGATCATTGCTCCTTATCGTACTGTACCGACGGCTTAATCGACGCCATAATGGGATCGACCGGAATCACGATCTCGAACAACTACTTCTCGCACCACGACGAGGTGATGCTGCTGGGGCATGAGGACGGCTATACGCCAGACTCGGGGATGCAGGTGACGATTGCGTTTAATTTGTTCGGCGAGAAGCTGGTTCAGCGGATGCCGCGGTGCCGGCGGGGTTATATACACGTGGTCAACAACGAGTTCCGATCGTGGGAGATGTACGCCATCGGCGGTAGCGGTGGTCCGACGATCAACAGCCAAGGGAATCGGTATATTGCGCCGGGGAATCCCAATGCGAAGGAGTCCACGGCGCGTATTCTGAACGCGCCGCTGAGGGAAATTATTTATAGGGAAGTTTTCGGGGCTTTAAGTTTTTTTTCTAACTTTTTCAAAATTTTAATTTTAGCAATTTCTGATAACGTAGGGGCAAAACTGAAAATTTTAAAATATACAAGGACCAAATGTAAAATATGTAAAGTCAATGATTTGACGGGACAGTCCTCAGCCACTGGCTTCCTGTTTTGGACGACCTGTGTGACGAAGCGCGTGGACACAAACGCGGGGGATTGGTCGGAGTGGAACTGGAGGACGGAGGGGGACATTATGGTAAATGGTGCATTTTTTGTGCCGTCCGGCGAAGGACTGAGCAATATGTACGTTAAAGCTTCGAGTGTGGCGCCCAAATCCGCCGCTCTTGTCGACCAACTCACTCTCAACGCCGGCGTCTTCGGCGGGACCAGGGAGAGTAGACAGAGCAGCTCGTACCCTGGAGACGAGAGCTTTTCCAATTCCGGGTCCAGTGGCAGCGATGGCGGTGGTGACTACTTCGGGATGATATTCGGCGGGGGCGGTGTGAACAGTGCACTGCCACCATCTCTTTCAGTTGTTAACATGGTCGTTCTAACTCTGCTTACTATTTTAGTTCTGTACACAAACTCCATCTATGATGCTTTATTATCATTGACAGCATTGTAG 1863 49.06 MFAAIAILLFSWFLSSSLPSMAAFSFNLTDPHLLPDPETVAYEVQRLCPEHASNGVLQLFLFRHFNKHLVCIVVLLKGAVPCFNGFLPTNLVISMSVNDSFSRREMLSIHSKGQSNSCQTGNPIDDCWRCGSNWQDNRQRLADCSIGFGRNAMGGKGGQIYIVTDSSDSDPVNPRPGTLRYAVVQDEPLWIVFAADMTIKLKYELMMNSYKTLDGRGANVHITGGGCITLQYISNVIIHNINIHHCIPTGHTNVRSSPTHVGYRGKSDGDGISIFSSRNIWIDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHDEVMLLGHEDGYTPDSGMQVTIAFNLFGEKLVQRMPRCRRGYIHVVNNEFRSWEMYAIGGSGGPTINSQGNRYIAPGNPNAKESTARILNAPLREIIYREVFGALSFFSNFFKILILAISDNVGAKLKILKYTRTKCKICKVNDLTGQSSATGFLFWTTCVTKRVDTNAGDWSEWNWRTEGDIMVNGAFFVPSGEGLSNMYVKASSVAPKSAALVDQLTLNAGVFGGTRESRQSSSYPGDESFSNSGSSGSDGGGDYFGMIFGGGGVNSALPPSLSVVNMVVLTLLTILVLYTNSIYDALLSLTAL 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19398147 19401954 + CmoCh04G026670.1 Cmo04g02667 381642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02667 620 Gene3D - 466 540 IPR012334 -
Cmo04g02667 620 Gene3D - 121 411 IPR012334 -
Cmo04g02667 620 PANTHER PECTATE LYASE 18-RELATED 94 402 IPR045032 GO:0030570
Cmo04g02667 620 MobiDBLite consensus disorder prediction 542 564 - -
Cmo04g02667 620 SMART amb_all 196 393 IPR002022 -
Cmo04g02667 620 PANTHER PECTATE LYASE 18-RELATED 475 557 IPR045032 GO:0030570
Cmo04g02667 620 SUPERFAMILY Pectin lyase-like 116 537 IPR011050 -
Cmo04g02667 620 PRINTS Pollen allergen Amb family signature 144 161 IPR018082 -
Cmo04g02667 620 PRINTS Pollen allergen Amb family signature 268 289 IPR018082 -
Cmo04g02667 620 PRINTS Pollen allergen Amb family signature 370 389 IPR018082 -
Cmo04g02667 620 PRINTS Pollen allergen Amb family signature 168 193 IPR018082 -
Cmo04g02667 620 PRINTS Pollen allergen Amb family signature 204 220 IPR018082 -
Cmo04g02667 620 PRINTS Pollen allergen Amb family signature 348 367 IPR018082 -
Cmo04g02667 620 PANTHER PECTATE LYASE 475 557 - -
Cmo04g02667 620 PANTHER PECTATE LYASE 94 402 - -
Cmo04g02667 620 Pfam Pectate lyase 204 373 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02667 Cmo-Chr4:19398147 Cmo14g01918 Cmo-Chr14:14249841 8.65E-11 dispersed
Cmo15g00508 Cmo-Chr15:2333478 Cmo04g02667 Cmo-Chr4:19398147 1.23E-55 wgd
Cmo18g00915 Cmo-Chr18:10329109 Cmo04g02667 Cmo-Chr4:19398147 3.15E-23 wgd
Cmo03g01201 Cmo-Chr3:9366781 Cmo04g02667 Cmo-Chr4:19398147 2.02E-19 wgd
Cmo04g01465 Cmo-Chr4:7492582 Cmo04g02667 Cmo-Chr4:19398147 1.91E-27 wgd
Cmo04g02667 Cmo-Chr4:19398147 Cmo07g00925 Cmo-Chr7:4447501 6.28E-20 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02667 K01728 - csv:101207535 635.95