Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02672 ATGAATGTCTCGATTTGTGTTTGTATTTTGCTATCCCTTTTGATTCTTTCTCCGGGTTCTTCTTTGGCTGGAATCGTCGATGATTCTAGTATTCCGTCCTTCAATTTTCCTTCCGACCAGGCTGAGAAGCTCATCAGAGAGCTCAATCTGTTTCCTAAAAGTGATGCCAATATCATCCATCGGAGTATTGAAAATTCCTCTCTGATCGCCACCGGGTCGAAGAAAATCGTGGAGAGGCGGTTGAGATTCCCAATCCTTGGTGATTCTGAGGTTTCTGTGGAGGACTTGGGCCACCATGCTGGATATTACAAGATCGAACACTCTCATGATGCGAGGATGTTCTACTTTTTCTTCGAGTCCCGTAACAACAAAACAACAGATCCTGTCGTTATCTGGTTGACTGGAGGCCCAGGATGCAGTAGCGAATTGGCTATGTTTTATGAAAACGGTCCTTTTAAAGTTGCTAACAACTTGTCACTTGTTTGGAATGAATATGGTTGGGATAAGGTTTCAAATCTTCTGTATGTCGACCAACCTATTGGGACTGGTTTTAGCTATAGTTCTGATAGGGAAGATATTCGTCATGATGAAAATGGTGTTAGTAATGACCTTTACGACTTCTTGCAGGCTTTCTTTGCGGAAAACCCCGACCTTGTGGAGAATGACTTCTTCATAACTGGAGAATCTTATGCTGGGCATTATATTCCTGCTTTGGCTGCCCGGATTCATCAGGGAAACAAAGCCAAAGAAGGAACTCATATAAACCTTAAAGGATTTGCTATTGGCAATGGGCTTACTGATCCAGCAATCCAATACAAAACTTACCCAGACTATGCATTGGACATGGGCATCATTACAAAGTCTCAACATCGTCATATTAACTTGTTGGTTCCACCCTGTGAACTTGCAATTAATCTGTGTGGTACTGATGGCACACTTTCTTGCATGACTTCTTATTTTGTTTGCAACGCCATATTTACCAGCATCATGTTGCATGCCGGTGATATGAATCACTATGATATCAGGAAAAAGTGTGAAGGGAGTCTCTGCTACGACTTCTCAAATATGGAGAAATTCTTGAACCTGCAATCTGTTAGGGAAACGCTCGGAGTTGGGGACATAGAATTTGTTTCGTGCAGTCCTACTGTCTATAGGGCGATGCTGGTGGACTGGATGAGGAACGCCGAAGTGGGTATTCCTGCTCTACTCGAGGACGGGATCAAGTTGCTTGTATATGCGGGAGAGTATGATTTGATCTGCAATTGGCTAGGCAATTCAAGATGGGTAAATGCTATGGAATGGTCTGGTAAGGAGGAGTTCGGGAATTCTCCGAACGTCCCTTTCCTAGTCGACGGTTCAGAAGCAGGATTGCTTAAACAACATGGCCCCCTCAGTTTTCTCAAGGTTCACGACGCGGGTCACATGGTCCCAATGGACCAGCCGAAGGCGGCATTAGAGATGCTGAAGAGGTGGACTGGAGGCGCACTCTATGATGAATCATTTGAAACAGGAAACATGGTCGCTCAGATGTGA 1533 44.36 MNVSICVCILLSLLILSPGSSLAGIVDDSSIPSFNFPSDQAEKLIRELNLFPKSDANIIHRSIENSSLIATGSKKIVERRLRFPILGDSEVSVEDLGHHAGYYKIEHSHDARMFYFFFESRNNKTTDPVVIWLTGGPGCSSELAMFYENGPFKVANNLSLVWNEYGWDKVSNLLYVDQPIGTGFSYSSDREDIRHDENGVSNDLYDFLQAFFAENPDLVENDFFITGESYAGHYIPALAARIHQGNKAKEGTHINLKGFAIGNGLTDPAIQYKTYPDYALDMGIITKSQHRHINLLVPPCELAINLCGTDGTLSCMTSYFVCNAIFTSIMLHAGDMNHYDIRKKCEGSLCYDFSNMEKFLNLQSVRETLGVGDIEFVSCSPTVYRAMLVDWMRNAEVGIPALLEDGIKLLVYAGEYDLICNWLGNSRWVNAMEWSGKEEFGNSPNVPFLVDGSEAGLLKQHGPLSFLKVHDAGHMVPMDQPKAALEMLKRWTGGALYDESFETGNMVAQM 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19433751 19437493 + CmoCh04G026720.1 Cmo04g02672 381647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02672 510 ProSitePatterns Serine carboxypeptidases, serine active site. 225 232 IPR018202 GO:0004185
Cmo04g02672 510 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 32 499 IPR001563 GO:0004185|GO:0006508
Cmo04g02672 510 SUPERFAMILY alpha/beta-Hydrolases 97 494 IPR029058 -
Cmo04g02672 510 PANTHER CARBOXYPEPTIDASE 32 499 - -
Cmo04g02672 510 Pfam Serine carboxypeptidase 96 493 IPR001563 GO:0004185|GO:0006508
Cmo04g02672 510 Gene3D alpha/beta hydrolase 79 505 IPR029058 -
Cmo04g02672 510 PRINTS Carboxypeptidase C serine protease (S10) family signature 163 175 IPR001563 GO:0004185|GO:0006508
Cmo04g02672 510 PRINTS Carboxypeptidase C serine protease (S10) family signature 176 186 IPR001563 GO:0004185|GO:0006508
Cmo04g02672 510 PRINTS Carboxypeptidase C serine protease (S10) family signature 211 236 IPR001563 GO:0004185|GO:0006508
Cmo04g02672 510 PRINTS Carboxypeptidase C serine protease (S10) family signature 464 477 IPR001563 GO:0004185|GO:0006508
Cmo04g02672 510 ProSitePatterns Serine carboxypeptidases, histidine active site. 464 481 IPR033124 GO:0004185
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01071 Cmo04g02672 CCT
Cmo04g01071 Cmo04g02672 ECH
Cmo04g02672 Cmo04g01071 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02672 Cmo-Chr4:19433751 Cmo13g00241 Cmo-Chr13:1946712 0 dispersed
Cmo04g02672 Cmo-Chr4:19433751 Cmo01g00544 Cmo-Chr1:2694278 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02672 K16298 - csv:101206561 898.656