Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02692 ATGAATAGAGGAATGGATTCAGTGATAGAACCAATGAGGAACGTTGAGAAGTGTTTAGATTCTCAGCTATGGCATGCTTGTGCTGGTGGGATGGTTCAAATGCCTTCTGTTAACTCTAAGGTAGTCTACTTTCCCCAGGGCCACGCCGAGCATGCTCAGGGGAATGTCGATTTTGGGAACGCTCGGATTCCTTCACTCATTCCTTGTAGGGTGTCTGCTACTAAATATATGGCAGATCTTGAAACGGATGAGATTTTTGCTAAGATAAGTTTGCTTCCATTGAGGAACAATGAATTCAATTTGGATGACGACGACGAGCTTCTTGGACACGATGATATTAGGAACCAGGAGAAACCGTCTTCCTTTGCCAAGACATTGACGCAATCTGATGCGAACAATGGTGGAGGATTCTCTGTTCCTCGCTATTGTGCCGAGACTATCTTTCCTCCGTTGGATTACTCGGCAGAACCTCCTGTTCAGACCATTCTTGCCAAGGATGTTCATGGAGAGATTTGGAAGTTTAGACATATATACAGAGGGACTCCCCGTCGCCATCTTTTGACGACGGGGTGGAGTAATTTTGTGAATCAGAAGAAGCTTGTTGCAGGGGACTCGATTGTTTTCCTCCGGGCTGAAACGGGTGATCTTTGTGTCGGAGTTAGGCGAGCCAAGAGGGGAATTGGTTGCGGAATTGATTACTCACCTGGGTGGAACCCTGCAAATTCAGGCTCTTCACTTATGGGGTATTCTGATTTCATGAGGGAAAATGAAGGTAGAATGGTAAGACGACACTCAAACGGGAACCTTAACGGGAGAGTGAAGGTTGAATCCGTCATCGAAGCTGCAACGCTTGCTGCCAGTGGCAAGCGCTTCGAGATTGTGTACTACCCATGTGCTGGCACTCCAGAATTTGTTGTTAGGGCCTCTACTGTAAGATCTGCCATGCAAATTCATTGGTATTCTGCTATGAGATTTAAGATGCCTTTTGAAACCGAGGATTCGTCTCGGATAAGCTGGTTTATGGGAACGATATCTTCGATCCAGGTTGCCGATCCTGTTCGGTGGCCTGATTCTCCATGGCGAATGCTGCAGGTGTCATGGGATGAGCCAGATTTACTACAAAATGTGAAGAGTGTTAACCCCTGGTTGGTTGAAGTGGTAGTAAACATGCCAGCAATCCATGTCTCCCCCTTCTTGCCACCAAGAAAGAAGCCACGTTATCCGCTTCCGGCCGAAACTGCTGTATTTGGTCACCTTCCGATGCCATCGTTTTCGACTAATTTCTTCGAAGCAACCAACCCGTTTCAAAGCATTACGGCGAGCAACATTCCTGCAGGCATACAGGGAGCCAGGCATACTCAATTTGGACTCTCTTCATCCAACCTCCAAATCAGCATACCGCCTTTGGGACAGTTTCCCGCCAGTCTTAAGCACCTTGAAGGTGCCACTCCGATCCCTGTCGTCCGTGGCGAGGATAGCTTCGGAGGCACGAAAAGCCCTGATAATCAATCTCATTGGCTAACAGTGGGAAATCATATCCAAAGCTCAAAAGAAAGCAAAGAAACAAAACCAGATCATATCATATTGTTTGGCCAACTCATTCTTCCTAATCAACAGAGTTCTAACAGCTCCTCTGGCGATACGACGAACGCATCCGATGCAAATCTAGAGAAAGCGTCGAATCTTTCTGATGGTTCTGGCTTGTCATCACAGCAGAACGGTTCACTGGACAATTCATCAGATGGAGGGTCTACGTCATACAACGGTCCAAACAAAACTGGTCTAAGCTTGGACATTGGTCATTGCGAGGTGTTTATGGAGTTGGAGAATGTCAGTCACACACTCGACCTGTCGGTCCTTGGATCGTACGAAGAATTGTATAGAAAGCTCGGCAACATGTTTAGCGTAGGACGGTCAGAGATGCTGAATTCTGTTCTTTATCAGGATGCTCTTGGTGCTACAAAGCAAGCTGGAGATGAGCCTTTCAGGTAA 1992 46.89 MNRGMDSVIEPMRNVEKCLDSQLWHACAGGMVQMPSVNSKVVYFPQGHAEHAQGNVDFGNARIPSLIPCRVSATKYMADLETDEIFAKISLLPLRNNEFNLDDDDELLGHDDIRNQEKPSSFAKTLTQSDANNGGGFSVPRYCAETIFPPLDYSAEPPVQTILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFLRAETGDLCVGVRRAKRGIGCGIDYSPGWNPANSGSSLMGYSDFMRENEGRMVRRHSNGNLNGRVKVESVIEAATLAASGKRFEIVYYPCAGTPEFVVRASTVRSAMQIHWYSAMRFKMPFETEDSSRISWFMGTISSIQVADPVRWPDSPWRMLQVSWDEPDLLQNVKSVNPWLVEVVVNMPAIHVSPFLPPRKKPRYPLPAETAVFGHLPMPSFSTNFFEATNPFQSITASNIPAGIQGARHTQFGLSSSNLQISIPPLGQFPASLKHLEGATPIPVVRGEDSFGGTKSPDNQSHWLTVGNHIQSSKESKETKPDHIILFGQLILPNQQSSNSSSGDTTNASDANLEKASNLSDGSGLSSQQNGSLDNSSDGGSTSYNGPNKTGLSLDIGHCEVFMELENVSHTLDLSVLGSYEELYRKLGNMFSVGRSEMLNSVLYQDALGATKQAGDEPFR 663
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19603016 19605100 + CmoCh04G026920.1 Cmo04g02692 381667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02692 663 MobiDBLite consensus disorder prediction 487 506 - -
Cmo04g02692 663 Pfam Auxin response factor 281 364 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cmo04g02692 663 CDD B3_DNA 121 222 IPR003340 GO:0003677
Cmo04g02692 663 Gene3D - 599 663 - -
Cmo04g02692 663 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 11 662 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cmo04g02692 663 SMART B3_2 122 224 IPR003340 GO:0003677
Cmo04g02692 663 SUPERFAMILY DNA-binding pseudobarrel domain 109 224 IPR015300 -
Cmo04g02692 663 Pfam B3 DNA binding domain 122 223 IPR003340 GO:0003677
Cmo04g02692 663 PANTHER AUXIN RESPONSE FACTOR 16 11 662 - -
Cmo04g02692 663 MobiDBLite consensus disorder prediction 558 589 - -
Cmo04g02692 663 Gene3D - 120 224 IPR015300 -
Cmo04g02692 663 ProSiteProfiles B3 DNA-binding domain profile. 122 224 IPR003340 GO:0003677
Cmo04g02692 663 Gene3D - 320 391 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g02692 Cmo15g00471 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02692 Cmo-Chr4:19603016 Cmo12g00112 Cmo-Chr12:650533 3.21E-102 dispersed
Cmo15g00471 Cmo-Chr15:2129289 Cmo04g02692 Cmo-Chr4:19603016 0 wgd
Cmo20g00525 Cmo-Chr20:2533242 Cmo04g02692 Cmo-Chr4:19603016 0 wgd
Cmo03g01235 Cmo-Chr3:9536729 Cmo04g02692 Cmo-Chr4:19603016 0 wgd
Cmo04g02692 Cmo-Chr4:19603016 Cmo07g00959 Cmo-Chr7:4686626 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9731 PF02362 B3 4.40E-21 CL0405 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02692 - - cmo:103496426 1095.11