Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02700 ATGGCAATGGCCGTAAGAGTAAAGATGCAAACGCTATCACTTCTAAGCAACGTTCTTCTAATAAACTTAAGTGGTATGCACAGTGAAATCACTGTTCTGAGTGGGTCAGAGCGACAAAGCTCTTCCCTCCCCAACTTTGCACCATATTCAAATCAAAATCCATCGCCGGAAATTGATTTTCTCTCTCCTAGGGCTTCGATTTTCGATTTCTCTGTCATTATGGCTAAGAATGCAGCGGAACGCGGCTCGTTCTCGGCGAAGGACTACCACGATCCACCACCGGCGCCGCTCATCGATGCCGTGGAGATTACGAAATGGTCGTTTTACAGAGCTCTGATTGCGGAGTTCATAGCCACTCTGCTTTTCCTGTACGTCACTGTGTTGACGGTGATCGGCTACAAATCGCAGACGGATCATATCGGCAACAAGAACGTTGATCCTTGCGGTGGCGTCGGGATTCTTGGCATTGCCTGGGCGTTTGGTGGAATGATCTTCGTTCTTGTTTACTGTACCGCTGGAATTTCAGGTGGGCACATAAATCCAGCAGTGACATTTGGGCTTTTGTTGGCCCGAAAGGTGTCACTTGTCCGGGCCGTGATGTACATGGTGGCCCAATGCTTAGGGGCCATTTGCGGAGTTGGGCTCGTGAAGTCCTTCCAGAAGGCCCACTTCCAGAAGTACGGCGGTGGGGCAAATGGGCTCGCCGACGGCTACACCGTCGGCGTTGGACTGGCGGCGGAGATCGTGGGGACGTTTGTGTTGGTGTATACAGTCTTCTCTGCTACAGATCCCAAACGAAGCGCAAGAGATTCCCACGTTCCTGTTTTGGCGCCACTCCCAATTGGATTTGCAGTGTTCATAGTTCACCTGGCCACCATTCCAGTCACTGGCACTGGAATCAACCCTGCAAGGAGCTTGGGATCTGCTGTTATTTTCAACCACCAAAACACTTGGAATAATCATTGGATATTTTGGGTTGGACCCTTCATAGGAGCAGCCATTGCAGCTTTCTACCACCAATTCATCTTGCGAGCAGGTGCTGTGAAGGCTCTTGGTTCATTTAGAAGCAACCCAAATGTGTGA 1083 50.32 MAMAVRVKMQTLSLLSNVLLINLSGMHSEITVLSGSERQSSSLPNFAPYSNQNPSPEIDFLSPRASIFDFSVIMAKNAAERGSFSAKDYHDPPPAPLIDAVEITKWSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDHIGNKNVDPCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLLLARKVSLVRAVMYMVAQCLGAICGVGLVKSFQKAHFQKYGGGANGLADGYTVGVGLAAEIVGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFIVHLATIPVTGTGINPARSLGSAVIFNHQNTWNNHWIFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSNPNV 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19632374 19635733 + CmoCh04G027000.1 Cmo04g02700 381675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02700 360 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 78 357 IPR034294 -
Cmo04g02700 360 CDD MIP 110 342 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo04g02700 360 Pfam Major intrinsic protein 102 339 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo04g02700 360 SUPERFAMILY Aquaporin-like 102 344 IPR023271 -
Cmo04g02700 360 ProSitePatterns MIP family signature. 178 186 IPR022357 -
Cmo04g02700 360 Gene3D Glycerol uptake facilitator protein. 95 360 IPR023271 -
Cmo04g02700 360 PRINTS Major intrinsic protein family signature 322 342 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo04g02700 360 PRINTS Major intrinsic protein family signature 160 184 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo04g02700 360 PRINTS Major intrinsic protein family signature 197 216 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo04g02700 360 PRINTS Major intrinsic protein family signature 282 304 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo04g02700 360 PRINTS Major intrinsic protein family signature 246 264 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo04g02700 360 PRINTS Major intrinsic protein family signature 110 129 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo04g02700 360 TIGRFAM MIP: MIP family channel proteins 114 339 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo04g02700 360 PANTHER AQUAPORIN PIP2-1 78 357 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01442 Cmo04g02700 CCT
Cmo04g02700 Cmo04g01442 ECH
Cmo04g01442 Cmo04g02700 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02700 Cmo-Chr4:19632374 Cmo07g00973 Cmo-Chr7:4770232 1.53E-167 dispersed
Cmo15g00466 Cmo-Chr15:2117137 Cmo04g02700 Cmo-Chr4:19632374 7.11E-21 wgd
Cmo18g00896 Cmo-Chr18:10199572 Cmo04g02700 Cmo-Chr4:19632374 2.34E-152 wgd
Cmo20g00519 Cmo-Chr20:2483693 Cmo04g02700 Cmo-Chr4:19632374 7.31E-124 wgd
Cmo03g01238 Cmo-Chr3:9553475 Cmo04g02700 Cmo-Chr4:19632374 7.49E-153 wgd
Cmo04g01442 Cmo-Chr4:7380649 Cmo04g02700 Cmo-Chr4:19632374 1.33E-171 wgd
Cmo04g02700 Cmo-Chr4:19632374 Cmo07g00971 Cmo-Chr7:4762813 3.40E-157 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02700 K09872 - twl:119980357 500.745