Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02721 ATGGGGAAGAAGGGAGGCTGGTTTTCTGCTGTGAAGAAAGCATTTGCTCCAGAATCAAAGGATAAGAAAGATCAGAAAGCTAACAAAACAAAGAAAAGATGGTTTGGGAAGCCAAAGAAATTGGAGACAGTGGCATCTGGGGAGCCAGCGCCATTGGAAGTGTCTATTCTACCTATTGAGGAAGTGAAACTAGCTAATGCAGAGAATGAACAGAGCAAACATGCTTACTCTGTTGCCATTGCCACTGCAGTCGCTGCGGAGGTGGCGGTTGCAGCGGCTCAGGCCGCCGCCGAGGTCGTTAGACTCACCACCCGCCCTTGGTACTCCGGAAAATCTAAGGAAGAAATAGGAGCCATCAAGATCCAGACTGCATTCCGCGGCTATATGGCTAGGAGGGCCCTGCGAGCATTAAGAGGGTTGGTGAGGCTGAAGTCATTGATACAAGGCCAATCTGTTAAAAGGCAAGCAACATCCACATTAAGATGCATGCAGACTCTTGCTCGAGTGCAGTCACAGATTCGTGCTAGAAGACTTAGATTGTCGGAGGAGAATCAGGCTCTTCAGAGACAGCTCCAACAAAAACATGAAAGAGAGCTCGAGAGATTAACTGTTACTGCAAACAATGAATGGGATGATAGTACCAAATCAAAGGAGCAAGTTGAAGCCAGATTAGTTAACAGGCAAGAAGCAGCAACAAGAAGAGAAAGGGCGTTGGCTTATGCTTACTCTCATCAGGTTCAATTCATTTCCAAGTTATGGAATAATTCTTCAAAATCTGCAAATCCTACGTTCATGGACCCCAACAATCCCCACTGGGGATGGAGTTGGTTAGAGCGATGGATGGCTGCTCGTCCATGGGAGACCAAAAGCACCGTCGATTACCACGATCGTGGCTCTGTCAAGAGCGCGATCAGCCATGCCACGTCAATTGGAGACATCGCCAAAGCTTACGCCCGTCGAGATTTCAATCTCGACATCAAGCCTTTTCCAAGGACTCCGACGAGCCATAATACGAGCCGTGCACCAAGTCGCCAATCGCCGGCGACTCCGACGAAGGCGCAATCGTCGCTATCTGCAGGAAGAAAATTGAAGTCAGCAAGTCCAAGAGGATTAGGCTGGGGCGGAGACGACGATTCCAGAAGCGGATTGAGCGTCAAATCGGAGCGGTTCCGGCGACGTAGCATCGCCGGATCATCGGTGAGGGACGACGAAAGCTTCACTAGTTCGCCGTCCGTTCCAAGCTACATGGCGTCCACAGAAGCAGCTAGGGCTAGGTCCCGCTTGTCGAGTCCGATGGGAATAGAGAAGACGACAGCAACTCCGGAGAAAGAACCGGTGAGTGGCGGCGCAAAGAAGCGGCTCTCATTCACCGCCTCGACGGCGACGGTGAGGAGACACTCTGGTCCACCGAAAATAGACGCTACTCCGATCAAGAATGTTGCAGCGACAGAGAGAGATTTTACCGGCGAGAGCAGATAG 1479 50.85 MGKKGGWFSAVKKAFAPESKDKKDQKANKTKKRWFGKPKKLETVASGEPAPLEVSILPIEEVKLANAENEQSKHAYSVAIATAVAAEVAVAAAQAAAEVVRLTTRPWYSGKSKEEIGAIKIQTAFRGYMARRALRALRGLVRLKSLIQGQSVKRQATSTLRCMQTLARVQSQIRARRLRLSEENQALQRQLQQKHERELERLTVTANNEWDDSTKSKEQVEARLVNRQEAATRRERALAYAYSHQVQFISKLWNNSSKSANPTFMDPNNPHWGWSWLERWMAARPWETKSTVDYHDRGSVKSAISHATSIGDIAKAYARRDFNLDIKPFPRTPTSHNTSRAPSRQSPATPTKAQSSLSAGRKLKSASPRGLGWGGDDDSRSGLSVKSERFRRRSIAGSSVRDDESFTSSPSVPSYMASTEAARARSRLSSPMGIEKTTATPEKEPVSGGAKKRLSFTASTATVRRHSGPPKIDATPIKNVAATERDFTGESR 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19731029 19734406 + CmoCh04G027210.1 Cmo04g02721 381696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02721 492 MobiDBLite consensus disorder prediction 381 399 - -
Cmo04g02721 492 MobiDBLite consensus disorder prediction 400 416 - -
Cmo04g02721 492 Pfam IQ calmodulin-binding motif 118 135 IPR000048 GO:0005515
Cmo04g02721 492 ProSiteProfiles IQ motif profile. 114 142 IPR000048 GO:0005515
Cmo04g02721 492 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 1 480 - -
Cmo04g02721 492 PANTHER IQ-DOMAIN 5-RELATED 1 480 - -
Cmo04g02721 492 Coils Coil 170 197 - -
Cmo04g02721 492 SMART iq_5 113 135 IPR000048 GO:0005515
Cmo04g02721 492 MobiDBLite consensus disorder prediction 330 362 - -
Cmo04g02721 492 MobiDBLite consensus disorder prediction 325 492 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01429 Cmo04g02721 CCT
Cmo04g02721 Cmo04g01429 ECH
Cmo04g01429 Cmo04g02721 ECH
Cmo04g02721 Cmo15g00445 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02305 Cmo-Chr4:17145811 Cmo04g02721 Cmo-Chr4:19731029 3.97E-36 dispersed
Cmo04g02721 Cmo-Chr4:19731029 Cmo06g00353 Cmo-Chr6:1719317 3.34E-09 dispersed
Cmo15g00857 Cmo-Chr15:4345006 Cmo04g02721 Cmo-Chr4:19731029 2.65E-37 dispersed
Cmo17g00690 Cmo-Chr17:7036672 Cmo04g02721 Cmo-Chr4:19731029 5.04E-27 dispersed
Cmo06g00970 Cmo-Chr6:7633142 Cmo04g02721 Cmo-Chr4:19731029 8.53E-48 transposed
Cmo17g00478 Cmo-Chr17:3532699 Cmo04g02721 Cmo-Chr4:19731029 7.18E-44 transposed
Cmo19g00901 Cmo-Chr19:8495660 Cmo04g02721 Cmo-Chr4:19731029 3.94E-18 transposed
Cmo15g00445 Cmo-Chr15:2025442 Cmo04g02721 Cmo-Chr4:19731029 0 wgd
Cmo18g00887 Cmo-Chr18:10128215 Cmo04g02721 Cmo-Chr4:19731029 1.04E-123 wgd
Cmo04g01429 Cmo-Chr4:7278716 Cmo04g02721 Cmo-Chr4:19731029 3.44E-102 wgd
Cmo04g02721 Cmo-Chr4:19731029 Cmo07g00981 Cmo-Chr7:4829625 7.31E-122 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02721 - - cmax:111487231 889.797