Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo04g02746 | ATGGAGCATCACACCGGACTGTGGACCCAAGCCAGGCCATTTATTGCAGTGATTCTTCAGCAGTTCATCACTGCCGGAATGGTCATCATTTCCAAGTTTGCTCTTAACCAAGGACTCAACCAGCACGTTTTAGTCGTCTATCGTTACGCCATTGCCACTGTTGTCGTTGCTCCTTTAGCTCTCGTCTTTGAAAGGAAAGTGAGACCCAAGATGACTTGGTCCGTTTTTGGAAAGATTGTCTTGCTTGGATTATTGGAGCCTGCACTCGACCAAAACTTATATTACACGGGCATGAAGTACACTACAGCAACTTTCGCCTCTGCTATGACCAACATGGTCCCTGGTCTCATCTTCCTCCTGGCTTGGATTGTTCGGCTGGAGAAGGTTAACGTAAGGCAGTTGTCAAGCCAGGCAAAGATACTAGGGACAGTGGTAGCGGTGGGAGGGGCTATGATAATGACTATGGTAAGGGGGCCAATTGTGAGCCTGCCATGGACAAAGAACACCCTCCTCCATCACTCTTCTGCAGCTGCAGTCAGCCAGCATGATTTTCTCAAGGGTGCTCTCATGATCACTACAGGCTGCATTTTTTGGTCTGTTTTTACTGTTCTTCAGGCGATTACAGTAAAGGTATACCCTGCACAGCTCTCCCTAACAGCTTTGATATGCTTCACCGGCGCCGTGCAAGCCTCAGTGATAGCTTTGGGAATGGAAAGGCACAATCCTGCTGCCTGGTCATTACATTTAGATTCCACCCTCTTAGCTCCTTTATACAGTGGAATCATGTCTTCAGGGGTCTCATATACTATTCAAGCAGCGATAATGAAAACGAAAGGGCCAGTTTTTGCAAGTACATTTAGTCCCCTAAGCATGGTCATTGTTGCAATCATCAGTTCATTCGCATTATCCGAGATATTATACTTTGGAAGGGTTCTTGGAGCAGCTGTTATTATTACAGGTCTTTATCTAGTTCTGTGGGGTAAAATCAAGGATCAGGCTCCATACAAGTCGGATATTGAGAAGATAGCCCCATCCGATCAGAAACCGACTGCCATAACCGACATACCTAAGACTTCAGATAAAGAACTTGTAGTTGATCTTGCTAGAATAAAGACAGTGGATGGTTCTGTTTGA | 1134 | 45.77 | MEHHTGLWTQARPFIAVILQQFITAGMVIISKFALNQGLNQHVLVVYRYAIATVVVAPLALVFERKVRPKMTWSVFGKIVLLGLLEPALDQNLYYTGMKYTTATFASAMTNMVPGLIFLLAWIVRLEKVNVRQLSSQAKILGTVVAVGGAMIMTMVRGPIVSLPWTKNTLLHHSSAAAVSQHDFLKGALMITTGCIFWSVFTVLQAITVKVYPAQLSLTALICFTGAVQASVIALGMERHNPAAWSLHLDSTLLAPLYSGIMSSGVSYTIQAAIMKTKGPVFASTFSPLSMVIVAIISSFALSEILYFGRVLGAAVIITGLYLVLWGKIKDQAPYKSDIEKIAPSDQKPTAITDIPKTSDKELVVDLARIKTVDGSV | 377 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 19879893 | 19882854 | - | CmoCh04G027460.1 | Cmo04g02746 | 381721 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo04g02746 | 377 | PANTHER | WAT1-RELATED PROTEIN | 9 | 340 | - | - | |
| Cmo04g02746 | 377 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 47 | 154 | - | - | |
| Cmo04g02746 | 377 | PANTHER | WAT1-RELATED PROTEIN | 9 | 340 | IPR030184 | GO:0016021|GO:0022857 | |
| Cmo04g02746 | 377 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 249 | 329 | - | - | |
| Cmo04g02746 | 377 | Pfam | EamA-like transporter family | 15 | 153 | IPR000620 | GO:0016020|GO:0016021 | |
| Cmo04g02746 | 377 | Pfam | EamA-like transporter family | 186 | 325 | IPR000620 | GO:0016020|GO:0016021 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo02g01581 | Cmo-Chr2:9125483 | Cmo04g02746 | Cmo-Chr4:19879893 | 9.07E-48 | dispersed | |
| Cmo04g01883 | Cmo-Chr4:9586137 | Cmo04g02746 | Cmo-Chr4:19879893 | 3.30E-151 | dispersed | |
| Cmo04g02746 | Cmo-Chr4:19879893 | Cmo04g02748 | Cmo-Chr4:19897348 | 1.68E-145 | dispersed | |
| Cmo15g00332 | Cmo-Chr15:1540074 | Cmo04g02746 | Cmo-Chr4:19879893 | 2.54E-59 | dispersed | |
| Cmo04g02746 | Cmo-Chr4:19879893 | Cmo04g02747 | Cmo-Chr4:19890448 | 1.43E-123 | tandem | |
| Cmo15g00424 | Cmo-Chr15:1916632 | Cmo04g02746 | Cmo-Chr4:19879893 | 3.43E-132 | wgd | |
| Cmo03g00455 | Cmo-Chr3:5080508 | Cmo04g02746 | Cmo-Chr4:19879893 | 4.83E-140 | wgd | |
| Cmo04g00227 | Cmo-Chr4:1137645 | Cmo04g02746 | Cmo-Chr4:19879893 | 1.20E-146 | wgd | |
| Cmo04g01270 | Cmo-Chr4:6434871 | Cmo04g02746 | Cmo-Chr4:19879893 | 9.91E-115 | wgd | |
| Cmo04g02746 | Cmo-Chr4:19879893 | Cmo07g01014 | Cmo-Chr7:5018602 | 1.99E-138 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo04g02746 | - | - | csv:101222430 | 624.394 |