Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo04g02748 | ATGGGGCAAGAAGGTCAAATGTTTGAGAAGGTAAAGCCATATTTGGGAGCAATTGCACTAAGATTCGCCTCTGCAGGAATGTCTATTATCTCTAAGGCTGCTCTAAACCAAGGAATGAATCAACTTGTTACCATTGTTTATCGTTACACTATTGGTGCCATTGTTGTTGCTCCTTTTGCCTTTGTCTTGGACAGGAAAATAAGACCAAAGATGACTCTTAGGATCTTCGGCAAGATCCTTCTACTGGGATTGCTCGAGCCTGTAATAGCTCAGAGCTTGATTTACTCTGGTACTAAATACACCACTGCAACTTTTGCAACTGCTATGTGCAATATTCTTCCTGCCTTTGCGTTTCTAATGGCTTGGATTTGCAGAATGGAGAAGGTGAATATTAGAAGATTACGAAGCCAGGCGAAGATTTTAGGCACTTTAGTGACAGTAGGAGGAGCAATGATGATGACTCTTATAAAAGGACCCATGTTGAATTTGCCTTGGACAAAAGAGAACCACATCCCTCACTCTTATTCCACCCTTGCAAACAAGCAAGAACCTGTTAAGGCTGCCATTGTTATTACCATTTCAAGTATCTGTTCCTCAGCCTTCACCATTCTTCTGGCGCATACAATAAGATCATACCCCGCTGAGCTTACACTAACAACTTTCATATGCTTGGCTGGAGCTGTGGAAAGTACTATTTTAGCTTTAGCATTTGAATGGAACAATCCAGCTGCATGGGCCTTACATGCAGATTCCATACTCTTAGCTGCCCTCTATGGTGGAATAATATCTTCTGGAATTGCTTATTATATCCAAGGAGTGGTAGTGAAGCTAAAAGGACCTGTGTTTGTAACTGCATTCAATCCTCTCAGCATGGTCGTAGTTGCTGTGATAAGTTCATTCATATTTTCCGAGAGACTGCGCTTAGGAAGGGTTATTGGAGCAGCTGTGATAATTACAGGCCTTTACTTGGTTCTGTGGGGCAAGAGCAAAGATCAGCTTCCATTAAAAGTGGGGAATGACGAATTACCAACTTCACACCAAAACTCAGCCACCACAAACCAGCAGCAGCCAAAGCCCTCAGATCAGCAGCTTCTAAAACCGGATGCCCCAACAGCAGCAAGCAACTCCAGTGCTTGA | 1137 | 43.01 | MGQEGQMFEKVKPYLGAIALRFASAGMSIISKAALNQGMNQLVTIVYRYTIGAIVVAPFAFVLDRKIRPKMTLRIFGKILLLGLLEPVIAQSLIYSGTKYTTATFATAMCNILPAFAFLMAWICRMEKVNIRRLRSQAKILGTLVTVGGAMMMTLIKGPMLNLPWTKENHIPHSYSTLANKQEPVKAAIVITISSICSSAFTILLAHTIRSYPAELTLTTFICLAGAVESTILALAFEWNNPAAWALHADSILLAALYGGIISSGIAYYIQGVVVKLKGPVFVTAFNPLSMVVVAVISSFIFSERLRLGRVIGAAVIITGLYLVLWGKSKDQLPLKVGNDELPTSHQNSATTNQQQPKPSDQQLLKPDAPTAASNSSA | 378 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 19897348 | 19899780 | - | CmoCh04G027480.1 | Cmo04g02748 | 381723 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo04g02748 | 378 | PANTHER | WAT1-RELATED PROTEIN | 9 | 337 | IPR030184 | GO:0016021|GO:0022857 | |
| Cmo04g02748 | 378 | PANTHER | WAT1-RELATED PROTEIN | 9 | 337 | - | - | |
| Cmo04g02748 | 378 | MobiDBLite | consensus disorder prediction | 341 | 378 | - | - | |
| Cmo04g02748 | 378 | MobiDBLite | consensus disorder prediction | 337 | 378 | - | - | |
| Cmo04g02748 | 378 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 47 | 155 | - | - | |
| Cmo04g02748 | 378 | Pfam | EamA-like transporter family | 13 | 153 | IPR000620 | GO:0016020|GO:0016021 | |
| Cmo04g02748 | 378 | Pfam | EamA-like transporter family | 187 | 325 | IPR000620 | GO:0016020|GO:0016021 | |
| Cmo04g02748 | 378 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 233 | 330 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cmo04g01271 | Cmo04g02748 | CCT | |
| Cmo04g00228 | Cmo04g02748 | CCT | |
| Cmo04g02748 | Cmo04g00228 | ECH | |
| Cmo04g01271 | Cmo04g02748 | ECH | |
| Cmo04g02748 | Cmo04g01271 | ECH | |
| Cmo04g00228 | Cmo04g02748 | ECH | |
| Cmo04g02748 | Cmo15g00424 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo04g02746 | Cmo-Chr4:19879893 | Cmo04g02748 | Cmo-Chr4:19897348 | 1.68E-145 | dispersed | |
| Cmo04g02748 | Cmo-Chr4:19897348 | Cmo15g00424 | Cmo-Chr15:1916632 | 0 | dispersed | |
| Cmo04g02747 | Cmo-Chr4:19890448 | Cmo04g02748 | Cmo-Chr4:19897348 | 1.85E-119 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo04g02748 | - | - | csv:101208640 | 598.586 |